Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00086
         (667 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0323 + 17518887-17519882                                         30   1.9  
01_06_0642 + 30811708-30811768,30812256-30812305,30812455-308129...    30   1.9  
03_06_0437 - 33912326-33912520,33912870-33912998,33913147-339133...    28   7.7  

>12_02_0323 + 17518887-17519882
          Length = 331

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +2

Query: 173 SFEYVGNLSKGSYFLPGLALTDNSNDMKYMKTK*RAQLTEMSLPTYSNR 319
           SFEY   +  G Y  PG  LT +SND +        Q+ ++S+P  + R
Sbjct: 30  SFEYPFGVEPGCYH-PGFNLTCSSNDTRLFMGDGTVQVLDISIPNSTLR 77


>01_06_0642 +
           30811708-30811768,30812256-30812305,30812455-30812926,
           30813237-30813596,30813694-30814101,30814383-30814453,
           30814553-30814629,30814741-30814888,30815878-30816039,
           30816119-30816304
          Length = 664

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = +2

Query: 95  TGDALFNFPAYQSVRQWSAGGPAYLYS 175
           T DA F  P Y  VR +SAG   Y YS
Sbjct: 313 TSDAFFISPGYHPVRLFSAGSHGYPYS 339


>03_06_0437 -
           33912326-33912520,33912870-33912998,33913147-33913317,
           33913877-33913993,33914150-33914800
          Length = 420

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +2

Query: 14  ISLTDY-YGSVFNTTLNAVDGLSQIVEATGDALFNFPAYQSVRQWSA 151
           +S+T   +G  F   + A  G ++  +  G+A+ N PA+ ++RQ  A
Sbjct: 337 VSITSLSFGKEFTHAIEAKQGEAKSAQLIGEAINNNPAFLALRQIEA 383


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,628,866
Number of Sequences: 37544
Number of extensions: 393177
Number of successful extensions: 870
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)