Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00086
         (667 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.86 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.86 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   2.0  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    22   4.6  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   4.6  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   6.0  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   8.0  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.6 bits (51), Expect = 0.86
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +3

Query: 420  NGEENNTKTNLMGLQPYSEENDQFLKIMMAQNQI 521
            +GEE   +  L GL+PY+    ++  ++ A NQ+
Sbjct: 1064 DGEEGGAELRLTGLRPYT----KYTLVVQAYNQV 1093


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.6 bits (51), Expect = 0.86
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +3

Query: 420  NGEENNTKTNLMGLQPYSEENDQFLKIMMAQNQI 521
            +GEE   +  L GL+PY+    ++  ++ A NQ+
Sbjct: 1060 DGEEGGAELRLTGLRPYT----KYTLVVQAYNQV 1089


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +1

Query: 31  LWIGLQYNFKRSRWSISN 84
           LW+ L++N    RW++S+
Sbjct: 74  LWLKLEWNDVNMRWNVSD 91


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 12/50 (24%), Positives = 22/50 (44%)
 Frame = +3

Query: 300 CLHIRTVGHRRKSMSGAVSDSDAKVRDNFVDLISKFAHSLNGEENNTKTN 449
           CL    +  +   +S A  D    + D  + +     HS++G+E N  T+
Sbjct: 47  CLPAPRINSKSPLLSCACPDGLKLLSDGLMCVEKDSIHSIDGDEENGLTS 96


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 440 CIVLFSIKAVREFGNEIYKVVPN 372
           CIV  S   VR  GN +  ++P+
Sbjct: 215 CIVFGSDMIVRSIGNSLMVILPD 237


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 277 GPAHGDELAYIF 312
           G  HGDE+ Y+F
Sbjct: 493 GVLHGDEVEYVF 504


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 123 RTRVFASGAQGVPLIYIA 176
           R+   AS A G PL Y+A
Sbjct: 132 RSSALASKATGYPLAYVA 149


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,090
Number of Sequences: 438
Number of extensions: 4537
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)