Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00086
         (667 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g54460.1 68414.m06212 expressed protein                             30   1.2  
At3g21160.1 68416.m02673 mannosyl-oligosaccharide 1,2-alpha-mann...    30   1.6  
At5g18360.1 68418.m02160 disease resistance protein (TIR-NBS-LRR...    29   2.1  
At1g51590.1 68414.m05808 mannosyl-oligosaccharide 1,2-alpha-mann...    29   2.1  
At4g17695.1 68417.m02643 myb family transcription factor (KAN3) ...    29   2.8  
At1g22430.1 68414.m02804 alcohol dehydrogenase, putative similar...    27   8.5  

>At1g54460.1 68414.m06212 expressed protein
          Length = 338

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = +3

Query: 324 HRRKSMSGAVSDSDAKVRDNFVDLISKFAHSLNGEENNTKTNLMGLQPYSEENDQFLK 497
           +RRKS S  V+ S  +V+       ++  HS+ G ++  KTN +   P S   DQ  K
Sbjct: 251 NRRKSCSDTVNASYQEVKGKHC---ARHRHSVGGCKDEVKTNSVPRTPNSSSKDQMRK 305


>At3g21160.1 68416.m02673 mannosyl-oligosaccharide
           1,2-alpha-mannosidase, putative similar to
           mannosyl-oligosaccharide 1,2-alpha-mannosidase [Glycine
           max][GI:6552504]
          Length = 572

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 26  DYYGSVFNTTLNAVDGLSQIVEATGDALF 112
           DY  S+F TT+  V GL    + +GD +F
Sbjct: 173 DYAASMFETTIRVVGGLLSAYDLSGDKIF 201


>At5g18360.1 68418.m02160 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 900

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
 Frame = +3

Query: 378 DNFVDLISKFAHSLNGEENNTKT----NLMGLQPYSEENDQFLKIMMAQNQIKGL 530
           DN  DLI K A S++ E N+T +    NL+G+  +  E D  L +   + ++ G+
Sbjct: 158 DNEADLIDKIAMSISYELNSTLSRDSYNLVGIDNHMRELDSLLCLESTEVKMVGI 212


>At1g51590.1 68414.m05808 mannosyl-oligosaccharide
           1,2-alpha-mannosidase, putative similar to
           mannosyl-oligosaccharide 1,2-alpha-mannosidase [Glycine
           max][GI:6552504]
          Length = 560

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 26  DYYGSVFNTTLNAVDGLSQIVEATGDALF 112
           DY  S+F TT+  V GL    + +GD +F
Sbjct: 172 DYDASMFETTIRVVGGLLSAYDLSGDKMF 200


>At4g17695.1 68417.m02643 myb family transcription factor (KAN3)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain; identical to cDNA GARP-like putative
           transcription factor KANADI3 (KAN3)  GI:15723596
          Length = 322

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 19/68 (27%), Positives = 28/68 (41%)
 Frame = +3

Query: 327 RRKSMSGAVSDSDAKVRDNFVDLISKFAHSLNGEENNTKTNLMGLQPYSEENDQFLKIMM 506
           RR       SD D K  +N +       H+L    NN  T +   Q + E  DQ L+ + 
Sbjct: 36  RRLGFQSKASDLDNKSSNNLI-------HTLQFTSNNEATKINSNQEHKESLDQDLRSIF 88

Query: 507 AQNQIKGL 530
               I+G+
Sbjct: 89  MMRPIRGI 96


>At1g22430.1 68414.m02804 alcohol dehydrogenase, putative similar to
           alcohol dehydrogenase ADH GI:7705214 from [Lycopersicon
           esculentum]; contains Pfam zinc-binding dehydrogenase
           domain PF00107
          Length = 388

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 557 GMADRLTG-ALCKNLIGDLLSKLPIPLPVD 643
           G  D L G  +C +L G L SKL IP+ VD
Sbjct: 316 GSFDLLRGRVICGSLFGGLKSKLDIPILVD 345


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,147,837
Number of Sequences: 28952
Number of extensions: 324077
Number of successful extensions: 776
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)