Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00084X
         (535 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2...    25   7.1  
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    25   9.4  

>SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 411

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
 Frame = -3

Query: 524 FLVFRSGDLVFSGEGEWY-FSSPRVLF-*RPLRVVGLSF-EIDIERDLDLIMSAL*RSKS 354
           F+++RS  +    +G WY F   R +F   PL     +F E DI  ++ LI   L R   
Sbjct: 346 FMIYRSKGIFNKDDGSWYIFQGVREVFEIMPLSEKPRAFLEKDIHPEIILIGRNLHRISP 405

Query: 353 FNAG 342
           F  G
Sbjct: 406 FVVG 409


>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 503 DLVFSGEGEWYFSSP 459
           DL+ S E EW++ SP
Sbjct: 105 DLIVSAEKEWHYGSP 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,044,691
Number of Sequences: 5004
Number of extensions: 37540
Number of successful extensions: 68
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)