Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00084X
(535 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23865| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_21956| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_51353| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_9429| Best HMM Match : Pili_assembly_N (HMM E-Value=5.8) 29 3.2
SB_32710| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_20186| Best HMM Match : hATC (HMM E-Value=0.14) 28 5.5
SB_57054| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_56381| Best HMM Match : hATC (HMM E-Value=0.14) 28 5.5
SB_9632| Best HMM Match : hATC (HMM E-Value=0.16) 28 5.5
SB_23053| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_16306| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_23855| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
>SB_23865| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 171
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 410 SQRTDPQHEEGVRRGLVVKKNTILLHQK 493
SQ+T P G+R L+ NTILL QK
Sbjct: 24 SQQTQPDQNPGLRDNLIEHDNTILLLQK 51
>SB_21956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 67
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 392 DHVLCLSQRTDPQHEEGVRRGLVVKKNTILLHQ 490
D VL + + DP+ EEG R+G + K N I+ Q
Sbjct: 10 DKVLGMFHQFDPEDEEGNRKGYINKDNFIMCLQ 42
>SB_51353| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 642
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 392 DHVLCLSQRTDPQHEEGVRRGLVVKKNTILLHQ 490
D VL + + DP+ EEG R+G + K N I+ Q
Sbjct: 271 DKVLGMFHQFDPEDEEGNRKGYINKDNFIMCLQ 303
>SB_9429| Best HMM Match : Pili_assembly_N (HMM E-Value=5.8)
Length = 125
Score = 28.7 bits (61), Expect = 3.2
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 47 TYIMKLKKAKSDTEEVIPPQAEI 115
TY K KK ++D E +PPQ +I
Sbjct: 73 TYFSKYKKKRTDKESRLPPQVQI 95
>SB_32710| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 206
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 238 VQKYPNKLDDIVKSTGGQIVYNGDQFTAYQLLGKQPALKDLER 366
VQ + +K + + G++ D+F AYQ LG L DL R
Sbjct: 137 VQFFISKFPTLEAAMEGKMDALYDEFCAYQALGNDSQLSDLSR 179
>SB_20186| Best HMM Match : hATC (HMM E-Value=0.14)
Length = 709
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 238 VQKYPNKLDDIVKSTGGQIVYNGDQFTAYQLLGKQPALKDLER 366
VQ + +K + + G++ D+F AYQ LG L DL R
Sbjct: 559 VQFFISKFPTLEAAMEGKMDALYDEFCAYQALGNDSQLSDLSR 601
>SB_57054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 955
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 238 VQKYPNKLDDIVKSTGGQIVYNGDQFTAYQLLGKQPALKDLER 366
VQ + +K + + G++ D+F AYQ LG L DL R
Sbjct: 805 VQFFISKFPTLEAAMEGKMDALYDEFCAYQALGNDSQLSDLSR 847
>SB_56381| Best HMM Match : hATC (HMM E-Value=0.14)
Length = 249
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 238 VQKYPNKLDDIVKSTGGQIVYNGDQFTAYQLLGKQPALKDLER 366
VQ + +K + + G++ D+F AYQ LG L DL R
Sbjct: 99 VQFFISKFPTLEAAMEGKMDALYDEFCAYQALGNDSQLSDLSR 141
>SB_9632| Best HMM Match : hATC (HMM E-Value=0.16)
Length = 248
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 238 VQKYPNKLDDIVKSTGGQIVYNGDQFTAYQLLGKQPALKDLER 366
VQ + +K + + G++ D+F AYQ LG L DL R
Sbjct: 99 VQFFISKFPTLEAAMEGKMDALYDEFCAYQALGNDSQLSDLSR 141
>SB_23053| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 497
Score = 27.5 bits (58), Expect = 7.3
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 392 DHVLCLSQRTDPQHEEGVRR 451
DH L LS+RT P H GV +
Sbjct: 106 DHTLGLSKRTGPDHTHGVSK 125
Score = 27.5 bits (58), Expect = 7.3
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 392 DHVLCLSQRTDPQHEEGVRR 451
DH L LS+RT P H GV +
Sbjct: 214 DHTLGLSKRTGPDHTHGVSK 233
>SB_16306| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 958
Score = 27.5 bits (58), Expect = 7.3
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 234 MSTKVSKQTGRYS*EHWRPDCLQRRSIHRVSVAWKTT 344
M+T V+ T R + + W PD L R S+H +A+ +T
Sbjct: 341 MTTLVTSFTRRRAPDPWFPDSLLRPSLHVRDLAYLST 377
>SB_23855| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +3
Query: 186 KKNYQKSNYKLTKMPTMSTKVSKQTGRYS*EHWR 287
KKNY S +LT +P+ + + G + WR
Sbjct: 386 KKNYNNSRLRLTSVPSTNNRKRNFEGSLTSPQWR 419
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,854,278
Number of Sequences: 59808
Number of extensions: 274438
Number of successful extensions: 591
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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