Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00084X
         (535 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   2.0  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   7.9  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   7.9  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    21   7.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.9  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   7.9  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = +1

Query: 244 KYPNKLDDIVKSTGGQIVYNGDQFTAYQLLGKQPAL 351
           KYPN    +   TG        QF  +Q   +QP L
Sbjct: 166 KYPNNWLSVFNGTGWTFHEGRKQFYFHQFYKQQPDL 201


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 9/20 (45%), Positives = 14/20 (70%), Gaps = 2/20 (10%)
 Frame = -1

Query: 133 VEIGFNDFGLRWN--DFLGI 80
           VE  +ND+ L+WN  D+ G+
Sbjct: 73  VEQEWNDYKLKWNPDDYGGV 92


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +3

Query: 291 DCLQRRSIHRVSVAWKTTSIERL 359
           DC Q+   HR + A  T ++++L
Sbjct: 873 DCWQKERTHRPTFANLTQTLDKL 895


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +3

Query: 417 GQTHNTKRASEEDSW*RKIPFSFTRKNQIS*PKHKEKKK 533
           G  H + R S E S  R     + +K++     H EKKK
Sbjct: 223 GFQHTSSRYSRERSCSRDRNREYKKKDRRYEKLHNEKKK 261


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 454  SSSDALFVLWVCPL 413
            SS  ALF+ W+ PL
Sbjct: 1225 SSPQALFISWLPPL 1238


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 454  SSSDALFVLWVCPL 413
            SS  ALF+ W+ PL
Sbjct: 1221 SSPQALFISWLPPL 1234


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 482 LHQKKPNLLTETQGKEER 535
           LH+ KP++  ET G+  R
Sbjct: 502 LHKNKPDMNYETMGRALR 519


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,864
Number of Sequences: 438
Number of extensions: 2466
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)