BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= heS00084X (535 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g04480.1 68416.m00475 endoribonuclease L-PSP family protein c... 30 1.1 At1g51960.1 68414.m05857 calmodulin-binding family protein conta... 28 4.5 At1g03055.2 68414.m00279 expressed protein 28 4.5 At1g03055.1 68414.m00278 expressed protein 28 4.5 At5g40820.1 68418.m04956 FAT domain-containing protein / phospha... 27 5.9 At5g25130.1 68418.m02977 cytochrome P450 family protein CYTOCHRO... 27 5.9 At1g77450.1 68414.m09019 no apical meristem (NAM) family protein... 27 5.9 At1g67500.1 68414.m07688 DNA polymerase family B protein similar... 27 5.9 At3g25420.1 68416.m03161 serine carboxypeptidase S10 family prot... 27 7.9 >At3g04480.1 68416.m00475 endoribonuclease L-PSP family protein contains Pfam domain PF01902: Domain of unknown function Length = 715 Score = 29.9 bits (64), Expect = 1.1 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 3/75 (4%) Frame = +3 Query: 267 YS*EHWRPDCLQRRSIH-RVSVAWKTTSIERLGASKCGHNKI*IT--FYVYLKGQTHNTK 437 Y E W DC+Q+R + +V VA + S E + + ++ I F VYL +T + Sbjct: 575 YKPEKWHQDCVQKRVVDGKVCVAVLSISAELMRKLQGEEEELEIVSRFCVYLLNKTLSEN 634 Query: 438 RASEEDSW*RKIPFS 482 S +D+ +I FS Sbjct: 635 SFSWQDTTSLRIHFS 649 >At1g51960.1 68414.m05857 calmodulin-binding family protein contains IQ calmodulin-binding motif, Pfam:PF00612 Length = 351 Score = 27.9 bits (59), Expect = 4.5 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%) Frame = -1 Query: 520 LCFGQEIWFFLVKEN-GIFLHHESSSDALFVL 428 LCF E W F +N LHH S+++ +V+ Sbjct: 238 LCFSDEKWKFATAQNTPRLLHHHSANNRYYVM 269 >At1g03055.2 68414.m00279 expressed protein Length = 200 Score = 27.9 bits (59), Expect = 4.5 Identities = 13/26 (50%), Positives = 17/26 (65%) Frame = +3 Query: 420 QTHNTKRASEEDSW*RKIPFSFTRKN 497 +T NTK AS EDS+ KI ++ KN Sbjct: 56 ETSNTKNASIEDSFFSKIAINYLSKN 81 >At1g03055.1 68414.m00278 expressed protein Length = 264 Score = 27.9 bits (59), Expect = 4.5 Identities = 13/26 (50%), Positives = 17/26 (65%) Frame = +3 Query: 420 QTHNTKRASEEDSW*RKIPFSFTRKN 497 +T NTK AS EDS+ KI ++ KN Sbjct: 56 ETSNTKNASIEDSFFSKIAINYLSKN 81 >At5g40820.1 68418.m04956 FAT domain-containing protein / phosphatidylinositol 3- and 4-kinase family protein similar to Atr protein [Xenopus laevis] GI:11385422; contains Pfam profiles PF00454 Phosphatidylinositol 3- and 4-kinase, PF02259 FAT domain, PF02260 FAT C domain Length = 2702 Score = 27.5 bits (58), Expect = 5.9 Identities = 18/56 (32%), Positives = 29/56 (51%) Frame = -2 Query: 522 PCVSVRRFGFFW*RRMVFFFTTSPLLTPSSCCGSVL*DRHRT*SRSYYVRTLTLQV 355 P +S RR+ +W R++ F T S + ++C G V RH + +Y + L L V Sbjct: 1479 PSMSFRRWLSYWIRKLTAFATGSRVSIFAACRGIV---RHDMQTATYLLPYLVLDV 1531 >At5g25130.1 68418.m02977 cytochrome P450 family protein CYTOCHROME P450 71B1 - Thlaspi arvense, EMBL:L24438 Length = 496 Score = 27.5 bits (58), Expect = 5.9 Identities = 12/28 (42%), Positives = 19/28 (67%) Frame = +2 Query: 62 LKKAKSDTEEVIPPQAEIIEADLYKRSY 145 LKKA+++ EVI + +IIE D+ + Y Sbjct: 320 LKKAQAEVREVIKHKDDIIEEDIERLQY 347 >At1g77450.1 68414.m09019 no apical meristem (NAM) family protein contains Pfam PF02365: No apical meristem (NAM) domain; similar to GRAB1 protein GB:CAA09371, a novel member of the NAC domain family Length = 253 Score = 27.5 bits (58), Expect = 5.9 Identities = 10/16 (62%), Positives = 11/16 (68%) Frame = -3 Query: 503 DLVFSGEGEWYFSSPR 456 D+ GE EWYF SPR Sbjct: 57 DMALYGEKEWYFFSPR 72 >At1g67500.1 68414.m07688 DNA polymerase family B protein similar to SP|Q61493 DNA polymerase zeta catalytic subunit (EC 2.7.7.7) {Mus musculus}; contains Pfam profile PF00136: DNA polymerase family B Length = 1890 Score = 27.5 bits (58), Expect = 5.9 Identities = 9/21 (42%), Positives = 14/21 (66%) Frame = +3 Query: 294 CLQRRSIHRVSVAWKTTSIER 356 CLQ +S ++ WKT+ +ER Sbjct: 1806 CLQNKSAAAATIVWKTSKLER 1826 >At3g25420.1 68416.m03161 serine carboxypeptidase S10 family protein similar to serine carboxypeptidase I precursor (SP:P37890) from [Oryza sativa] Length = 505 Score = 27.1 bits (57), Expect = 7.9 Identities = 17/49 (34%), Positives = 23/49 (46%) Frame = -2 Query: 480 RMVFFFTTSPLLTPSSCCGSVL*DRHRT*SRSYYVRTLTLQVFQCWLFS 334 + + F + S + C S L RH T S Y R LTL F+ +FS Sbjct: 377 QFIIFLSISISIGNWELCSSNLEYRHDTGSMIEYHRNLTLSGFRALIFS 425 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,604,191 Number of Sequences: 28952 Number of extensions: 194585 Number of successful extensions: 435 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 433 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 435 length of database: 12,070,560 effective HSP length: 77 effective length of database: 9,841,256 effective search space used: 984125600 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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