Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00083
         (830 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.15c |tgs1|SPAC521.01c|RNA methyltransferase Tgs1 |Schiz...    32   0.087
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |...    30   0.35 
SPCC1393.09c |||RWD domain|Schizosaccharomyces pombe|chr 3|||Manual    28   1.4  
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb...    27   2.5  
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ...    27   3.3  
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    26   5.7  
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    26   7.5  
SPAP8A3.10 |||mitochondrial intermembrane space protein sorting ...    26   7.5  
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce...    26   7.5  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    26   7.5  
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    25   10.0 
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos...    25   10.0 
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    25   10.0 
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    25   10.0 
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy...    25   10.0 
SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2...    25   10.0 

>SPAC2G11.15c |tgs1|SPAC521.01c|RNA methyltransferase Tgs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score = 32.3 bits (70), Expect = 0.087
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = +2

Query: 767 RFDEGIKLDRESWFSVT 817
           RFDEGI LD +SW+SVT
Sbjct: 39  RFDEGIWLDYQSWYSVT 55


>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 30.3 bits (65), Expect = 0.35
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +1

Query: 313 KKYGTGKKTYFDDDGNALNLDEYEKQMQHVEECT-QTISDTERKSEHDPSEVIERKDE 483
           KKY T KKT         NL++YE++ +   E T + I+D    S      ++E  D+
Sbjct: 135 KKYYTLKKTKSAYYNKCRNLEDYEEESKESNETTSEAITDLTTVSSPQQQSLLENDDD 192


>SPCC1393.09c |||RWD domain|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 215

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 13/54 (24%), Positives = 29/54 (53%)
 Frame = +1

Query: 349 DDGNALNLDEYEKQMQHVEECTQTISDTERKSEHDPSEVIERKDEKDKGYIEGW 510
           ++ NA+ +++ +++ Q +EE  +  ++ E K  H     +E   E  KG+ + W
Sbjct: 109 EETNAILIEQSQRETQAIEERHRKEAEQENKKFHGTPVTVESFTEWKKGF-DAW 161


>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 497

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = +1

Query: 358 NALNLDEYEKQMQHVEECTQTISDTERKSEHDPSEVIERKDEKDK 492
           +++N+D  E+    VEE  +TIS  E+ S+ +  +  E+K EK K
Sbjct: 433 SSVNIDGDEEVDIDVEETVETIS--EKPSKKEKKDKKEKKKEKSK 475


>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 878

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
 Frame = +1

Query: 277 RKRLARLRPPRNKKYGTGKKTYFDDDGNALNLDEYEKQMQHVEECTQTISDTERKSEHDP 456
           R+ LA+LRP   +  GT + +YF     A   D  ++    +   +  +  TE+ +  +P
Sbjct: 100 REGLAKLRPEATRNEGTSENSYFVSLEEA--QDHAQQYKLGIWGPSDDVVVTEKANPANP 157

Query: 457 SEVIE-RKDEKDKGYIE 504
           ++ ++  K +K  G +E
Sbjct: 158 AKFLKAHKGKKLNGIVE 174


>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = -1

Query: 587 HLSSITRILHFHSPFENSAFHVAPKFQPSIYPLSFSSL--RSITSEGSCSLFL 435
           HLS + R  HF++P     F      + ++   SF SL   S+    S ++F+
Sbjct: 420 HLSPLNRKTHFNNPIGQPQFTCLDDHEKTLRETSFRSLDDMSLRKSNSDNIFV 472


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +2

Query: 236 CLNAEKH*KATWFIENGWPAYVPPEIRNMELERKHTLTMTVMHSIWMSMKNK 391
           C N  +    TWFIE+ +   +P + R +   +   L   V H+  M +K++
Sbjct: 484 CRNCVER-STTWFIESNYHDGLPSDSRKITYRKPGFLESFVEHNKLMWLKDR 534


>SPAP8A3.10 |||mitochondrial intermembrane space protein sorting
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 171

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 334 KTYFDDDGNALNLDEYEKQMQHVEECTQTISDTERK 441
           +T+  D    L + EY + +Q  E C++TI DT  K
Sbjct: 93  ETFNLDHVKILRVIEYSRFIQSSENCSKTIVDTIAK 128


>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 610

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +1

Query: 313 KKYGTGKKTYFDDDGNALNLDEYEKQMQHVEE 408
           +K+G+G   YF   GN   LDE+EK+++  E+
Sbjct: 338 QKWGSG--CYFYGLGNDEQLDEFEKRLESGEK 367


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 346  DDDGNALNLDEYEKQMQHVEE 408
            DD  N +NL E EK+ + +E+
Sbjct: 1406 DDSSNKINLSEKEKEKESIED 1426


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 380 MKNKCSMSKNALKRYRTQRERANTILQKLLNVKMKKTKDI 499
           +KN C+  K   + Y  Q  +    L+ LLN + K  K I
Sbjct: 417 VKNDCTSEKKTRQSYEQQTVKIEEQLKFLLNKEKKLKKSI 456


>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 980

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +2

Query: 188 ETASETIKSTFEIMGFCLNAEKH*KATWFIENGWP 292
           E A E  K+ F    F L  ++    TWF    WP
Sbjct: 553 EQAEEKAKAAFPGKSFTLEQDEDVLDTWFSSGLWP 587


>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 10/39 (25%), Positives = 25/39 (64%)
 Frame = +3

Query: 528 ESRVFERTMKVQDSCDAAEMPQDSEEQVEDNSVTQQETS 644
           E+ +F+   K ++  ++ E+P+DS+   +D+S +  ++S
Sbjct: 341 ETSLFKSQRKEENEEESKELPEDSDIYGKDSSPSSDDSS 379


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 10/40 (25%), Positives = 22/40 (55%)
 Frame = -1

Query: 539 NSAFHVAPKFQPSIYPLSFSSLRSITSEGSCSLFLSVSDI 420
           + +F V+   + S+YP+  ++   +  E    +FL +SD+
Sbjct: 78  SGSFRVSAIRRQSLYPIILNAFEYLIKEFKKDVFLKISDV 117


>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 735

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 277 RKRLARLRPPRNKKYGTGKKTYFDDDGNAL 366
           ++++A  +    K   +  K YFDD+GNA+
Sbjct: 577 KEKMASSKKAMLKYKKSADKVYFDDEGNAI 606


>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 825

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +1

Query: 238 FKCRKTLKGHMVYRKRLARLRPPRNKKYGTGKKTY 342
           + C+  L  H +  K +    PPR K+ G   +TY
Sbjct: 373 YNCQDFLDEHGLPTKGITEHLPPREKRMGQRHETY 407


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,283,414
Number of Sequences: 5004
Number of extensions: 65621
Number of successful extensions: 268
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)