Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00083
(830 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0253 - 16196275-16196307,16196425-16196550,16196643-161967... 33 0.21
02_03_0363 + 18169537-18169839 33 0.37
03_03_0253 + 15871870-15871949,15872101-15872170,15872666-158727... 32 0.49
01_06_0847 + 32411521-32411619,32411737-32411851,32412292-324123... 31 1.1
05_01_0247 - 1844275-1844514,1847822-1848140,1848219-1848348,184... 30 2.0
02_05_0180 - 26519845-26520684 29 3.4
11_06_0737 - 26794015-26794483,26795477-26795606,26796226-26796409 29 4.5
11_06_0648 + 25873779-25874279,25874418-25875548 29 4.5
11_06_0647 + 25870470-25870744,25870765-25871533 29 6.0
08_02_0880 + 22203440-22204324,22204763-22204876,22204964-222054... 29 6.0
>10_08_0253 - 16196275-16196307,16196425-16196550,16196643-16196741,
16196822-16197001,16197090-16197371,16197471-16199141,
16199257-16199463,16199566-16199700,16199792-16200082,
16200403-16200621,16200876-16201034,16201120-16201181,
16201257-16201383,16201460-16201693,16201777-16202003,
16202163-16202257,16202341-16202468,16202574-16202594,
16202765-16202921,16203007-16203075,16203228-16203341,
16203415-16203491,16203576-16203688,16204432-16204507,
16204592-16204756,16204825-16204952,16205049-16205130,
16205426-16205548,16205633-16205860,16205933-16206034,
16206144-16206341,16206581-16206760,16206868-16207020,
16207690-16207797,16208201-16208355,16208786-16208912,
16209825-16209914,16209986-16210127,16210303-16210379,
16210467-16210582,16210638-16210773,16211130-16211198,
16211279-16211361,16211655-16211720,16211788-16211974,
16212054-16213547,16213635-16214165,16214234-16214363,
16214407-16215878,16216359-16216364,16216750-16217055,
16217364-16217468,16217577-16217772,16217862-16217929,
16218853-16220631,16221026-16221151,16221604-16221780,
16221997-16222128,16223461-16223498,16223710-16223788,
16224175-16224284,16224787-16224935,16225027-16225197,
16225281-16225552,16226355-16226442,16227942-16228369
Length = 5157
Score = 33.5 bits (73), Expect = 0.21
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +1
Query: 421 ISDTERKSEHDPSEVIERKDEKDKGYIEGWNL 516
++DTE K E D +++ER DEK+ + W+L
Sbjct: 3343 VADTEEKLEQDFLKIMERTDEKNSAVEDSWDL 3374
>02_03_0363 + 18169537-18169839
Length = 100
Score = 32.7 bits (71), Expect = 0.37
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = -3
Query: 279 SINHVAFQCFSAFKQKPIISNVDLIVSEAVXXXXXSWLRFNFI 151
++ H+AF+C + +KQ+ + V ++++ AV LR NFI
Sbjct: 43 AVAHLAFRCLTVWKQEDFVLRVCMLLNFAVLPVIGILLRTNFI 85
>03_03_0253 +
15871870-15871949,15872101-15872170,15872666-15872701,
15873576-15873630,15873859-15873941,15874019-15874850,
15875184-15875286,15875359-15875498,15875649-15875880,
15876203-15876338,15877208-15877302,15877381-15877504,
15877690-15877812
Length = 702
Score = 32.3 bits (70), Expect = 0.49
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +2
Query: 770 FDEGIKLDRESWFSVT 817
FD GIK+D E WFSVT
Sbjct: 495 FDSGIKMDEEGWFSVT 510
>01_06_0847 +
32411521-32411619,32411737-32411851,32412292-32412375,
32412430-32413478,32414690-32416371,32416477-32416586,
32417634-32418430,32418839-32418951,32419147-32419194,
32419425-32419652,32419732-32419829,32419967-32420019
Length = 1491
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = +1
Query: 280 KRLARLRPPRNKKYGTGKKTYFDDDGNALNLDEYEKQMQHVEECTQTISDTERKS 444
+RL ++ KK + KK ++ G L L H E + +SDTERK+
Sbjct: 163 RRLKQVLVEEKKKSNSEKKNAEEEKGKVLELQRLLNMETHKSEEYKRLSDTERKA 217
>05_01_0247 -
1844275-1844514,1847822-1848140,1848219-1848348,
1848706-1848883
Length = 288
Score = 30.3 bits (65), Expect = 2.0
Identities = 22/97 (22%), Positives = 44/97 (45%), Gaps = 5/97 (5%)
Frame = +2
Query: 287 WPAYVPPEIRNMELERKHTLTMTVMHSIWMSMKNKCSM-----SKNALKRYRTQRERANT 451
W Y+ P++R + L + +HS W + +K + + N +K Y R + +
Sbjct: 72 WLNYLRPDVRRGNITADEQLLILDLHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHA 131
Query: 452 ILQKLLNVKMKKTKDILKVGTWEPRGKQSFRTDYESA 562
Q +V K+ +D+++ W PR + + D +A
Sbjct: 132 -KQLRCDVNSKEFRDVVR-HVWMPRLIERIQADAAAA 166
>02_05_0180 - 26519845-26520684
Length = 279
Score = 29.5 bits (63), Expect = 3.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 723 GRPVILGASRMHPPPPSNTSSGV 655
GRP+ L R+ PPPP+ T G+
Sbjct: 107 GRPLSLPVRRLKPPPPAPTMPGI 129
>11_06_0737 - 26794015-26794483,26795477-26795606,26796226-26796409
Length = 260
Score = 29.1 bits (62), Expect = 4.5
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Frame = +2
Query: 287 WPAYVPPEIRNMELERKHTLTMTVMHSIWMSMKNKCSM-----SKNALKRYRTQRERANT 451
W Y+ P+++ + L + +HS W + +K + + N +K Y R + +
Sbjct: 74 WLNYLRPDVKRGNFTAEEQLLILDLHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKHA 133
Query: 452 ILQKLLNVKMKKTKDILKVGTWEPR 526
Q +V K+ KD +K W PR
Sbjct: 134 -KQLNCDVNSKRFKDAMKY-LWMPR 156
>11_06_0648 + 25873779-25874279,25874418-25875548
Length = 543
Score = 29.1 bits (62), Expect = 4.5
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +1
Query: 325 TGKKTYFDDDGNALNLDEYEKQMQHVEECTQTISDTERKSEHDPSEVIERKDE 483
TGKK YF + E + + EEC Q +TE E + E + K+E
Sbjct: 403 TGKKPYFSKEEWEKEKTEERVEEEKREECEQEGKNTEEGKESEREEDGKTKEE 455
>11_06_0647 + 25870470-25870744,25870765-25871533
Length = 347
Score = 28.7 bits (61), Expect = 6.0
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Frame = +1
Query: 325 TGKKTY-FDDDGNALNLDEYEKQMQHVE----ECTQTISDTERKSEHDPSEVIERKDEKD 489
TGKK+Y FD++ N +E++++ + E E + ++ E ++ D E ER++E+
Sbjct: 197 TGKKSYLFDEESVERNREEWKEREKTEEFEEDEKREECAEEEGENTQDDKEESERQEEEK 256
Query: 490 KGYIEGWNLGATW 528
E W+ W
Sbjct: 257 T--TEEWHEWYKW 267
>08_02_0880 +
22203440-22204324,22204763-22204876,22204964-22205455,
22205646-22205819,22206589-22206978,22209927-22210022,
22210645-22210760,22210872-22211042,22211126-22211285,
22211388-22211573,22211665-22211793,22211918-22211996,
22212159-22212268
Length = 1033
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 421 ISDTERKSEHDPSEVIERKDEKDKGYIEGWNLGA 522
+S + ++E S ++E D +D GYIE W L A
Sbjct: 306 LSKLKEQAEEYASLIMEELDPEDLGYIELWQLEA 339
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,126,751
Number of Sequences: 37544
Number of extensions: 414486
Number of successful extensions: 1640
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1635
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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