Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00083
         (830 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40761| Best HMM Match : UPF0020 (HMM E-Value=9.5e-06)               36   0.040
SB_9096| Best HMM Match : Acid_phosphat_A (HMM E-Value=0.18)           32   0.66 
SB_52977| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.66 
SB_27337| Best HMM Match : efhand (HMM E-Value=2.9e-21)                31   0.87 
SB_5515| Best HMM Match : PspA_IM30 (HMM E-Value=0.14)                 31   0.87 
SB_44623| Best HMM Match : RUN (HMM E-Value=1.6e-15)                   29   4.6  
SB_36647| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_38330| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  
SB_32934| Best HMM Match : K_tetra (HMM E-Value=7.79963e-42)           29   6.1  
SB_42867| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  
SB_1165| Best HMM Match : Pkinase (HMM E-Value=5.6e-23)                29   6.1  
SB_42746| Best HMM Match : Gas_vesicle_C (HMM E-Value=6.1)             28   8.1  
SB_5738| Best HMM Match : zf-CCHC (HMM E-Value=0.37)                   28   8.1  
SB_46059| Best HMM Match : Astacin (HMM E-Value=2.8e-17)               28   8.1  

>SB_40761| Best HMM Match : UPF0020 (HMM E-Value=9.5e-06)
          Length = 1176

 Score = 35.9 bits (79), Expect = 0.040
 Identities = 13/17 (76%), Positives = 16/17 (94%)
 Frame = +2

Query: 767  RFDEGIKLDRESWFSVT 817
            RFDEGIK+D+E W+SVT
Sbjct: 986  RFDEGIKMDKEGWYSVT 1002



 Score = 31.1 bits (67), Expect = 1.1
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 149 PIKLKRSHEYDDEETASETIKSTFEIMGF 235
           P  LKRSHE D EE  +  ++  + +MGF
Sbjct: 778 PRNLKRSHELDVEEQRALQLEKAYRLMGF 806


>SB_9096| Best HMM Match : Acid_phosphat_A (HMM E-Value=0.18)
          Length = 417

 Score = 31.9 bits (69), Expect = 0.66
 Identities = 17/71 (23%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
 Frame = +1

Query: 304 PRNKKYGTGKKTYFDDDGNALNLDEYEKQMQHVEECTQTISDTERKSEHDPS--EVIERK 477
           P+N+   TG  +   D  NA   D+YEK+M++ +       +++ +   D +  ++  R 
Sbjct: 139 PQNRVAATGVSSQGPDYKNAKFADDYEKEMENAKRKQVKDGESQDRDTGDVAGVDLSTRT 198

Query: 478 DEKDKGYIEGW 510
           ++K+  Y +G+
Sbjct: 199 EQKNAKYADGY 209


>SB_52977| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 929

 Score = 31.9 bits (69), Expect = 0.66
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = +1

Query: 346 DDDGNALNLDEYE----KQMQHVEECTQTISDTERKSEHDPSE 462
           +DD      D+YE    KQM+  E  T++ S+ E K EH P E
Sbjct: 333 NDDDTRGEYDDYEEMLRKQMEEAETPTESESEDEEKPEHKPRE 375


>SB_27337| Best HMM Match : efhand (HMM E-Value=2.9e-21)
          Length = 172

 Score = 31.5 bits (68), Expect = 0.87
 Identities = 14/19 (73%), Positives = 16/19 (84%), Gaps = 1/19 (5%)
 Frame = +1

Query: 343 FDDDGN-ALNLDEYEKQMQ 396
           FDDDGN ALN+DE+ K MQ
Sbjct: 47  FDDDGNRALNIDEFRKGMQ 65


>SB_5515| Best HMM Match : PspA_IM30 (HMM E-Value=0.14)
          Length = 388

 Score = 31.5 bits (68), Expect = 0.87
 Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
 Frame = +2

Query: 308 EIRNMELERKHTLTMTVMHSIWMSMKNKCSMSKNALKRYRTQRERANTILQKLLNVKMKK 487
           E+ N EL  +   ++  +  +    +N    S+NAL+R   Q +  NT+++KL     + 
Sbjct: 229 ELENSELTSQLGRSLENLKQLDQIHENTAVSSENALERMSGQVDVLNTVVEKLREENTRP 288

Query: 488 TK-DILKVGTWEPRGKQSFRTDYESAR 565
           ++   +K   WE   K++ +T   S +
Sbjct: 289 SELGAIKDNAWESVPKETPKTSNVSLK 315


>SB_44623| Best HMM Match : RUN (HMM E-Value=1.6e-15)
          Length = 1277

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 16/60 (26%), Positives = 28/60 (46%)
 Frame = +2

Query: 377 SMKNKCSMSKNALKRYRTQRERANTILQKLLNVKMKKTKDILKVGTWEPRGKQSFRTDYE 556
           S  NK S++   L    +         + + +VK++    IL  G W+ RG++ FR  +E
Sbjct: 112 SADNKLSITTFGLDGQLSSTGEVQLKTEGVASVKVRCDSRILASGAWDGRGRKVFRQGHE 171


>SB_36647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 19/72 (26%), Positives = 36/72 (50%)
 Frame = +1

Query: 277 RKRLARLRPPRNKKYGTGKKTYFDDDGNALNLDEYEKQMQHVEECTQTISDTERKSEHDP 456
           RKR  R R  R ++    KK   +++       E E++ + V E  + I +TE++ + + 
Sbjct: 46  RKRRRRRRRRRRRRKKEKKKKEEEEE-------EEEEETEAVNEEEEKIEETEKEKDEEE 98

Query: 457 SEVIERKDEKDK 492
               E ++E+DK
Sbjct: 99  ENEEEEEEEEDK 110


>SB_38330| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 13/54 (24%), Positives = 24/54 (44%)
 Frame = +3

Query: 582 EMPQDSEEQVEDNSVTQQETSXXXXXXXXYSRVEEDASEMPQELQDDPKMFKYW 743
           E+ ++ EE+ E+    ++E              EE+  E  +E  DD ++ K W
Sbjct: 134 EVEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEDDDDDEVAKQW 187


>SB_32934| Best HMM Match : K_tetra (HMM E-Value=7.79963e-42)
          Length = 1207

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 212 STFEIMGFC-LNAEKH*KATWFIENGWPAYVPPEIR 316
           +TF I GF  LNA  H    WF +  W AY+  +IR
Sbjct: 661 ATFSIEGFSVLNACSH----WFCDECWQAYLDEQIR 692


>SB_42867| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 870

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -2

Query: 502 QYILCLFHLYVQ*LLKDRVRSF-SLCPISFECILRHAAFVFHTH 374
           +Y+  ++H+YV  ++      F SLC     C+ RH A V+H +
Sbjct: 398 RYVASVYHVYV--VMSPVCTMFMSLCRQCAPCLCRHVASVYHVY 439


>SB_1165| Best HMM Match : Pkinase (HMM E-Value=5.6e-23)
          Length = 560

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
 Frame = +1

Query: 301 PPRNKKYGTGKKTYFDDDGNALNLDEYEKQMQHV-EECTQTISDTERKSEHDPSEVIERK 477
           P R +++G G     DDDG+    D+ +KQ + + ++C  +   +  K +  P + ++ +
Sbjct: 157 PRRVQRHGNG-----DDDGDG---DDEDKQSRKILKQCEASDIPSLNKDDGQPEDGVQPE 208

Query: 478 DEKDK 492
           DE DK
Sbjct: 209 DEIDK 213


>SB_42746| Best HMM Match : Gas_vesicle_C (HMM E-Value=6.1)
          Length = 365

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 549 TMKVQDSCDAAEMPQDSEEQVEDNSVTQQE 638
           T   ++SCD A+  +D  E++ED   T +E
Sbjct: 60  TSDTKESCDVAKSFEDEREKIEDGVATCEE 89


>SB_5738| Best HMM Match : zf-CCHC (HMM E-Value=0.37)
          Length = 700

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 549 TMKVQDSCDAAEMPQDSEEQVEDNSVTQQE 638
           T   ++SCD A+  +D  E++ED   T +E
Sbjct: 60  TSDTKESCDVAKSFEDEREKIEDGVATCEE 89


>SB_46059| Best HMM Match : Astacin (HMM E-Value=2.8e-17)
          Length = 1775

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +3

Query: 573  DAAEMPQDSEEQVEDNSVTQQETSXXXXXXXXYSRVE--EDASEMPQELQD 719
            D  + P+D+ E  +DNS++  + S        +SR +  +  S+ P+ L D
Sbjct: 1027 DDKDFPKDTPEPTDDNSISSNDESMLPKDDLDFSRDKDSDSISDSPKVLPD 1077


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,294,937
Number of Sequences: 59808
Number of extensions: 473159
Number of successful extensions: 1760
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1737
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2335516755
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)