Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00083
         (830 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY062207-1|AAL58568.1|  504|Anopheles gambiae cytochrome P450 CY...    24   4.9  
CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.          24   6.5  

>AY062207-1|AAL58568.1|  504|Anopheles gambiae cytochrome P450
           CYP6S2 protein.
          Length = 504

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 190 LFVVVFMASF*FYWIFF 140
           L V VF+A F  +WI+F
Sbjct: 2   LIVAVFVAFFGIFWIYF 18


>CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.
          Length = 659

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 3/87 (3%)
 Frame = +1

Query: 241 KCRKTLKGHMVYRKRLARLRPPRNKKYGTGKKTYFDDDG--NALNLDEYEKQMQHVEECT 414
           +CR   + +     R  R RP R K    GKK   DD G       +E     ++     
Sbjct: 505 RCRPRARRNPPATTRPVRHRPTRRKSTKRGKK---DDKGYDRRSGKEERSNDNRYTNGAD 561

Query: 415 QTISDTERKSEHDPSEVIER-KDEKDK 492
           +   D  +   H  S V+E  + ++D+
Sbjct: 562 RDRGDRSKGMNHTNSFVVEHSRRDRDR 588


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 814,396
Number of Sequences: 2352
Number of extensions: 15917
Number of successful extensions: 42
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 87651612
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)