Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00083
         (830 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    24   2.0  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   6.0  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   6.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   8.0  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   8.0  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 273 NHVAFQCFSAFKQKPIISNVDLIV 202
           ++VAF+  S  K++P+I+N  L V
Sbjct: 465 HYVAFKSLSYLKKQPVIANGSLEV 488


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = -2

Query: 706 WGISDASSSTLEYLFWRRLRF 644
           WG     +  LE  FWR L +
Sbjct: 25  WGTQFGQAPLLERFFWRTLDY 45


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +2

Query: 194 ASETIKSTFEIMGFCLNAEKH*KA-TWFIENGWPAYVPPEIRNME 325
           AS+   +  ++  F L  E   +A  WF   G P Y+ PE+   E
Sbjct: 43  ASKAKGAAVKLADFGLAIEVQGEAQAWFGFAGTPGYLSPEVLKKE 87


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 687  PPPPSNTSSGVVYV 646
            PPPP   SSG  Y+
Sbjct: 1356 PPPPPPPSSGQAYL 1369


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 11/21 (52%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
 Frame = -1

Query: 563 LHFHSPFENSAFHVAPK-FQP 504
           LHF  P   SAFH A + F P
Sbjct: 516 LHFKDPKVESAFHNAEEAFSP 536


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,486
Number of Sequences: 438
Number of extensions: 4660
Number of successful extensions: 59
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26581563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)