Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00083
(830 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g45231.2 68414.m05189 WW domain-containing protein Since this... 36 0.025
At1g48000.1 68414.m05346 myb family transcription factor similar... 33 0.31
At1g30550.1 68414.m03737 expressed protein similar to PIMT (GI:1... 31 0.94
At2g31420.1 68415.m03839 hypothetical protein contains Pfam prof... 30 1.6
At3g45810.1 68416.m04958 ferric reductase-like transmembrane com... 29 2.9
At3g06490.1 68416.m00753 myb family transcription factor (MYB108... 29 2.9
At2g33190.1 68415.m04066 F-box family protein contains F-box dom... 29 2.9
At4g16830.1 68417.m02540 nuclear RNA-binding protein (RGGA) iden... 29 3.8
At3g02810.1 68416.m00273 protein kinase family protein contains ... 29 3.8
At5g40340.1 68418.m04894 PWWP domain-containing protein KED, Nic... 29 5.0
At1g63110.3 68414.m07131 cell division cycle protein-related con... 29 5.0
At1g63110.1 68414.m07130 cell division cycle protein-related con... 29 5.0
At1g12730.1 68414.m01477 cell division cycle protein-related con... 29 5.0
At5g64580.1 68418.m08116 AAA-type ATPase family protein similar ... 28 6.6
At2g27090.1 68415.m03255 expressed protein contains Pfam domains... 28 6.6
At5g60010.1 68418.m07525 ferric reductase-like transmembrane com... 28 8.7
At3g61800.1 68416.m06935 expressed protein 28 8.7
At1g69070.1 68414.m07903 expressed protein 28 8.7
>At1g45231.2 68414.m05189 WW domain-containing protein Since this
genomic sequence region is unfinished, the annotated
gene may be missing a stop codon or start codon
Length = 538
Score = 36.3 bits (80), Expect = 0.025
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +2
Query: 767 RFDEGIKLDRESWFSVT 817
RFDEGIK+D E WFSVT
Sbjct: 337 RFDEGIKMDEEGWFSVT 353
>At1g48000.1 68414.m05346 myb family transcription factor similar to
myb-related transcription factor (cpm10) GB:U33915
GI:1002795 from [Craterostigma plantagineum]
Length = 243
Score = 32.7 bits (71), Expect = 0.31
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Frame = +2
Query: 287 WPAYVPPEIRNMELERKHTLTMTVMHSIWMSMKNKCSM-----SKNALKRYRTQRERANT 451
W Y+ P+IR ++ + + +HS W + +K + + N +K Y R + +
Sbjct: 77 WLNYLRPDIRRGDISLQEQFIILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKHA 136
Query: 452 ILQKLLNVKMKKTKDILKVGTWEPR 526
L K +V K+ KD +K W PR
Sbjct: 137 KLLK-CDVNSKQFKDTIK-HLWMPR 159
>At1g30550.1 68414.m03737 expressed protein similar to PIMT
(GI:15127914) [Mus musculus]; similar to hypothetical
protein GB:AAF19758 GI:6634778 from [Arabidopsis
thaliana]
Length = 391
Score = 31.1 bits (67), Expect = 0.94
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +2
Query: 767 RFDEGIKLDRESWFSVT 817
R+D+GI++D E W+SVT
Sbjct: 202 RYDQGIEMDEEGWYSVT 218
Score = 29.9 bits (64), Expect = 2.2
Identities = 9/17 (52%), Positives = 15/17 (88%)
Frame = +2
Query: 767 RFDEGIKLDRESWFSVT 817
++D+GI++D E W+SVT
Sbjct: 32 KYDQGIEMDEEGWYSVT 48
>At2g31420.1 68415.m03839 hypothetical protein contains Pfam profile
PF03754: Domain of unknown function (DUF313)
Length = 209
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = +1
Query: 361 ALNLDEYEKQMQHVEECTQTISDTERKSEHDPSEVIERKDEKDKG--YIEGWNLGATWKA 534
+++L + EK E+ T+ + + K++ D +V E DK Y++ WN WK
Sbjct: 98 SMHLSKLEKSDFLTEDETRFLDEDFLKAKRDGLKVFLVDPESDKHVVYLKKWNGNTVWKY 157
Query: 535 EFSNG 549
S+G
Sbjct: 158 VLSHG 162
>At3g45810.1 68416.m04958 ferric reductase-like transmembrane
component family protein similar to respiratory burst
oxidase protein D RbohD from Arabidopsis thaliana,
EMBL:AF055357 [gi:3242789], similar to respiratory burst
oxidase protein D RbohD from Arabidopsis thaliana,
EMBL:AF055357 [gi:3242789], respiratory burst oxidase
homolog from Solanum tuberosum [GI:16549089]; contains
Pfam profile PF01794 Ferric reductase like transmembrane
component
Length = 912
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/57 (24%), Positives = 28/57 (49%)
Frame = +1
Query: 346 DDDGNALNLDEYEKQMQHVEECTQTISDTERKSEHDPSEVIERKDEKDKGYIEGWNL 516
D DG+ +E K++ + + + ++ + S ++E D ++GYIE W L
Sbjct: 218 DKDGDGKLTEEEVKEVIVLSASANRLVNLKKNAASYASLIMEELDPNEQGYIEMWQL 274
>At3g06490.1 68416.m00753 myb family transcription factor (MYB108)
identical to transcription factor MYB108 GI:15375290
from [Arabidopsis thaliana]
Length = 323
Score = 29.5 bits (63), Expect = 2.9
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Frame = +2
Query: 287 WPAYVPPEIRNMELERKHTLTMTVMHSIWMSMKNKCSM-----SKNALKRYRTQRERANT 451
W Y+ P++R + + L + +HS W + +K + + N +K Y R + +
Sbjct: 64 WLNYLRPDVRRGNITLEEQLLILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHA 123
Query: 452 ILQKLLNVKMKKTKDILKVGTWEPR 526
Q +V ++ KD +K W PR
Sbjct: 124 -KQLKCDVNSQQFKDTMKY-LWMPR 146
>At2g33190.1 68415.m04066 F-box family protein contains F-box domain
Pfam:PF00646
Length = 379
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = +1
Query: 664 RGIRGWRRMHPRCPKNYRTTLRCLSIGRKGILCSQ---IRRGYKVGPGELVQRDPENV 828
R GW +++P ++ +L CL R G +CS + R + P +V R +V
Sbjct: 3 RDDNGWSKLYPDLLRSIFESLSCLDFHRAGTVCSNWYAVSRSCPLYPWRIVFRGKNSV 60
>At4g16830.1 68417.m02540 nuclear RNA-binding protein (RGGA)
identical to nuclear RNA binding protein GI:6492264 from
[Arabidopsis thaliana]
Length = 355
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/47 (25%), Positives = 27/47 (57%)
Frame = +1
Query: 346 DDDGNALNLDEYEKQMQHVEECTQTISDTERKSEHDPSEVIERKDEK 486
+ + + LDEYEK ++ ++ Q+++ +ERK + E +++ K
Sbjct: 220 EPEDKEMTLDEYEKILEEKKKALQSLTTSERKVDTKVFESMQQLSNK 266
>At3g02810.1 68416.m00273 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 558
Score = 29.1 bits (62), Expect = 3.8
Identities = 10/56 (17%), Positives = 34/56 (60%)
Frame = +1
Query: 325 TGKKTYFDDDGNALNLDEYEKQMQHVEECTQTISDTERKSEHDPSEVIERKDEKDK 492
+G+++ + + +++ +EY+K+ + + ++ +++ SEH+ + + DEK++
Sbjct: 394 SGEESSLESEKESVSKNEYKKKHEEEDSSMESDDESDSNSEHEKDQPPKPIDEKNQ 449
>At5g40340.1 68418.m04894 PWWP domain-containing protein KED,
Nicotiana tabacum, EMBL:AB009883
Length = 1008
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/72 (22%), Positives = 31/72 (43%)
Frame = +2
Query: 2 GDENEKKSVPAQSDSGEGIHINSYQQSDSNTSFKXXXXXXXXXXXXXXNPIKLKRSHEYD 181
G+E +K++ + + S +QSD + NP K++ +
Sbjct: 746 GEETQKEANESTKKERKRKKSESKKQSDGEEETQKEPSESTKKERKRKNPESKKKAEAVE 805
Query: 182 DEETASETIKST 217
+EET E+++ST
Sbjct: 806 EEETRKESVEST 817
>At1g63110.3 68414.m07131 cell division cycle protein-related
contains 9 transmembrane domains; similar to PIG-U
(GI:27372215) [Rattus norvegicus]; similar to Cell
division cycle protein 91-like 1 (CDC91-like 1 protein)
(PIG-U) (Swiss-Prot:Q9H490) [Homo sapiens]
Length = 407
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -1
Query: 551 SPFENSAFHVAPKFQPSIYPLSFSSLRSITSEGSCSLFLSVSDIV 417
SP+ S +H +P + PL+ ++ S CSL ++DI+
Sbjct: 2 SPYAGSMYHGSPLLLSVLGPLTVQRIKGQPSHLLCSLVFVIADIL 46
>At1g63110.1 68414.m07130 cell division cycle protein-related
contains 9 transmembrane domains; similar to PIG-U
(GI:27372215) [Rattus norvegicus]; similar to Cell
division cycle protein 91-like 1 (CDC91-like 1 protein)
(PIG-U) (Swiss-Prot:Q9H490) [Homo sapiens]
Length = 469
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -1
Query: 551 SPFENSAFHVAPKFQPSIYPLSFSSLRSITSEGSCSLFLSVSDIV 417
SP+ S +H +P + PL+ ++ S CSL ++DI+
Sbjct: 64 SPYAGSMYHGSPLLLSVLGPLTVQRIKGQPSHLLCSLVFVIADIL 108
>At1g12730.1 68414.m01477 cell division cycle protein-related
contains 10 transmembrane domains; similar to PIG-U
(GI:27372215) [Rattus norvegicus]; similar to Cell
division cycle protein 91-like 1 (CDC91-like 1 protein)
(PIG-U) (Swiss-Prot:Q9H490) [Homo sapiens]
Length = 474
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = -1
Query: 551 SPFENSAFHVAPKFQPSIYPLSFSSLRSITSEGSCSLFLSVSDIV 417
SP+ S +H +P + PL+ + +S CSL ++D++
Sbjct: 70 SPYAGSMYHGSPLLLSILGPLTVQRIEGQSSHHLCSLVFVIADLL 114
>At5g64580.1 68418.m08116 AAA-type ATPase family protein similar to
zinc dependent protease [Arabidopsis thaliana]
GI:7650138; contains Pfam profile PF00004: ATPase AAA
family
Length = 855
Score = 28.3 bits (60), Expect = 6.6
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Frame = +1
Query: 352 DGNALNLDEYEKQMQHVEECTQTISDTERKSEHDPS--EVIERKDEKDKGYIEGWNLGAT 525
D N++ EY Q + D E E + S E+I R+ D+ I+GWN
Sbjct: 158 DSNSVQYMEYSNYGQTISVILPYYKDGEPLGEEEDSKKEIIFRRHIVDRMPIDGWN--DV 215
Query: 526 WK 531
WK
Sbjct: 216 WK 217
>At2g27090.1 68415.m03255 expressed protein contains Pfam domains,
PF04782: Protein of unknown function (DUF632) and
PF04783: Protein of unknown function (DUF630)
Length = 743
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = -3
Query: 285 PFSINHVAFQCFSAFK--QKPIISNVDLIVSEAV 190
PF +NH+ F+ FS+ K +KP +S + + S ++
Sbjct: 114 PFQVNHMKFKGFSSKKVEEKPPVSIIATVTSSSI 147
>At5g60010.1 68418.m07525 ferric reductase-like transmembrane
component family protein similar to respiratory burst
oxidase protein D RbohD from Arabidopsis thaliana,
EMBL:AF055357 [gi:3242789], respiratory burst oxidase
homolog from Solanum tuberosum [GI:16549089]; contains
Pfam profile PF01794 Ferric reductase like transmembrane
component
Length = 839
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/57 (24%), Positives = 27/57 (47%)
Frame = +1
Query: 346 DDDGNALNLDEYEKQMQHVEECTQTISDTERKSEHDPSEVIERKDEKDKGYIEGWNL 516
D +G+ +E K++ + + + ++ + S ++E D KGYIE W L
Sbjct: 208 DKNGDGKLTEEEVKEVIVLSASANRLGNLKKNAAAYASLIMEELDPDHKGYIEMWQL 264
>At3g61800.1 68416.m06935 expressed protein
Length = 664
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Frame = +1
Query: 346 DDDGNAL----NLDEYEKQMQHVEECTQTISDTERKSEHDPSEV 465
DD+GN + LDE E Q Q +S E S+ DP+++
Sbjct: 504 DDEGNTIIQESPLDESENQTSSTSGTNQDVSMDETTSDSDPNQL 547
>At1g69070.1 68414.m07903 expressed protein
Length = 901
Score = 27.9 bits (59), Expect = 8.7
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = +1
Query: 346 DDDGNALNLDEYEKQMQHVEECTQTISDTERKSEHDPSEVIERKDEKD 489
DDDG + DE +++ H+E+ Q SD E +E + E E DE+D
Sbjct: 372 DDDGESDGGDEKQRKGHHLEDWEQ--SDDELGAELEDEE--EDDDEED 415
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,156,303
Number of Sequences: 28952
Number of extensions: 341345
Number of successful extensions: 1453
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1448
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1911862400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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