Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00082
         (513 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)              95   3e-20
SB_43135| Best HMM Match : CMAS (HMM E-Value=0)                        36   0.015
SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.0  
SB_51986| Best HMM Match : HLH (HMM E-Value=0.15)                      28   5.2  

>SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score = 95.1 bits (226), Expect = 3e-20
 Identities = 42/63 (66%), Positives = 54/63 (85%)
 Frame = +3

Query: 69  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 248
           M S +ELACVYSALIL DDDVA+T +KI T++KAA ++VEP+WPGLFAKAL+G N+ DLI
Sbjct: 1   MASTSELACVYSALILHDDDVAITADKIETLVKAAKINVEPFWPGLFAKALQGHNIADLI 60

Query: 249 TNS 257
            ++
Sbjct: 61  LSA 63



 Score = 28.7 bits (61), Expect = 3.0
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +2

Query: 371 SDDDMGFGLFD 403
           SDDDMGFGLFD
Sbjct: 100 SDDDMGFGLFD 110


>SB_43135| Best HMM Match : CMAS (HMM E-Value=0)
          Length = 254

 Score = 36.3 bits (80), Expect = 0.015
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -2

Query: 248 DQVTDIDAFQGFGEQTWPIWLYIYSRRFQDGGNFLTSYGNIIIHQDESR 102
           DQ+  I+ F+  G++ WP +  + S R + GG+ +      II  DESR
Sbjct: 102 DQIVSIEMFEAVGQENWPTYFQMLSERLKQGGSAVLQ----IICIDESR 146


>SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2978

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 165 KAAAVDVEPYWPGLFAKALEGINVRDLITNSALEWVLL 278
           + AAV+  P W G  A  +E   V D+  + AL+ +L+
Sbjct: 234 ECAAVEFLPKWKGFVAAGMEQDKVEDITLSQALDQILM 271


>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +2

Query: 371 SDDDMGFGLFD 403
           SDDDMGFGLFD
Sbjct: 752 SDDDMGFGLFD 762


>SB_51986| Best HMM Match : HLH (HMM E-Value=0.15)
          Length = 2110

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -3

Query: 256  ELVIRSRTLMPSKA-LANRPGQYGSTSTAAAFKMVEIFSPVTATSSSTRMRAE*TH 92
            +L++ S  + P ++ LA  PGQ G+T+T   F+      PV    S+  +    TH
Sbjct: 1762 QLIVPSPAIAPVQSQLATTPGQVGNTNT--LFRPASTMVPVQPAVSNETLHPAVTH 1815


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,722,304
Number of Sequences: 59808
Number of extensions: 192602
Number of successful extensions: 473
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)