Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00081
         (787 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)             127   1e-29
SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)        57   1e-08
SB_25385| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.012
SB_40301| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.61 
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_37813| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_56072| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_37758| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_47669| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  
SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  
SB_2203| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.9  

>SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score =  127 bits (306), Expect = 1e-29
 Identities = 58/70 (82%), Positives = 62/70 (88%)
 Frame = +1

Query: 550 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 729
           MGRVIR QRKGAGS+F SHTK RKGA  LR  DYAERHGYIKGVVK+IIHDPGRGAPLAV
Sbjct: 1   MGRVIRGQRKGAGSIFTSHTKHRKGAANLRVHDYAERHGYIKGVVKEIIHDPGRGAPLAV 60

Query: 730 VHFRDPYKFK 759
           V FRDPY++K
Sbjct: 61  VVFRDPYRYK 70


>SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)
          Length = 123

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 24/28 (85%), Positives = 27/28 (96%)
 Frame = +1

Query: 676 GVVKDIIHDPGRGAPLAVVHFRDPYKFK 759
           GVVK+IIHDPGRGAPLAVV FRDPY++K
Sbjct: 1   GVVKEIIHDPGRGAPLAVVVFRDPYRYK 28


>SB_25385| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 859

 Score = 37.5 bits (83), Expect = 0.012
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = -2

Query: 387 YDLNQAKELFESFVKEHNREYKDDADRELHYQSFKKNLAEINQLTRR 247
           +++ +   +F+ +VK+H + YKD+ +     + FK NL  I+   RR
Sbjct: 547 HNVEKVHRVFDKYVKKHKKNYKDNKEHHTRREHFKHNLRFIHSKNRR 593


>SB_40301| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2653

 Score = 31.9 bits (69), Expect = 0.61
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = -2

Query: 426  VMASSADTDPPRHYDLNQAKELFESFVKEHNREYKDDADREL 301
            V+AS A+ DP   Y L   K+LF + ++  + E  DD DR L
Sbjct: 1941 VVASLAEVDPMYQYSLKYFKQLFNACIE--SSEKTDDLDRRL 1980


>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3486

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 20/65 (30%), Positives = 32/65 (49%)
 Frame = +1

Query: 523  PNSAPGVVIMGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHD 702
            P+S  G  +     R+ R G     ++H  +RKG  +++SL  A R G   G +K + H 
Sbjct: 1709 PSSRKGGRMKSLAHRSSRNGGRMKSLAHPSRRKGG-RMKSL--AHRSGRNGGRMKSLAHR 1765

Query: 703  PGRGA 717
             GR +
Sbjct: 1766 SGRNS 1770



 Score = 28.3 bits (60), Expect = 7.5
 Identities = 20/63 (31%), Positives = 30/63 (47%)
 Frame = +1

Query: 523  PNSAPGVVIMGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHD 702
            P+S  G  +     R+ RKG     ++H   RKG  +++SL  A R G   G +K + H 
Sbjct: 1247 PSSRKGGRMKTLAHRSSRKGGRMKTLAHPSSRKGG-RMKSL--AHRSGRNGGRMKTLAHP 1303

Query: 703  PGR 711
              R
Sbjct: 1304 SSR 1306


>SB_37813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 450

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +1

Query: 487 WNRFTCACSALVPNS--APGVVIMGRVIRAQRK-GAGSVFVSHTKKRK 621
           W  F  +    +P S  APG +I  R      K GAGSV++SH KK K
Sbjct: 117 WRVFGASIEEQLPESRGAPGEIIGQRDNAILVKCGAGSVWLSHLKKDK 164


>SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1974

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +1

Query: 292  LIMQLSVGIILVFPVMFFDETLEQFFGLIEVIMS 393
            L+M+     +LV P++FF+  +E F G+ ++I S
Sbjct: 1199 LVMEYVERPVLVPPLIFFNHVIEMFVGISQMIRS 1232


>SB_56072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1308

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +2

Query: 401  SVSADDAITTVAINNATLTKFIFAQCINSGTGLLVPVLLSCRIR 532
            S +  D  +TV +  + LT    A C  + TGLL  V  SC+ R
Sbjct: 1165 SFTRSDKESTVLVGYSALTLIGVALCSCTVTGLLFAVYYSCKTR 1208


>SB_37758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 382

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -2

Query: 375 QAKELFESFVK-EHNREYKDDADRELHYQSFKKNL 274
           Q  E +++FVK +H +  K  ADREL  +  +K++
Sbjct: 265 QQSEQYQAFVKRQHVKRTKHPADRELEIRELRKSV 299


>SB_47669| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 708

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -2

Query: 405 TDPPRHYDLNQAKELFESFVKEHNREYKDDADRELHYQSFKKNLAE 268
           +D P+  +L+  + LFE+   +      DD  RE+ + +FK  L E
Sbjct: 520 SDEPKRSELDPQRTLFETGQGQGQVRRTDDEKREMFFIAFKDILPE 565


>SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3762

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -2

Query: 399 PPRHY--DLNQAKELFESFVKEHNREYK 322
           PP  Y  DLN AKEL E+ +K+   E K
Sbjct: 225 PPEEYYIDLNHAKELLENCLKQATSESK 252


>SB_2203| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 202

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -2

Query: 405 TDPPRHYDLNQAKELFESFVKEHNREYKDDADRELHYQSFKKNLAE 268
           +D P+  +L+  + LFE+   +      DD  RE+ + +FK  L E
Sbjct: 139 SDEPKRSELDPQRTLFETGQGQGQVRRTDDEKREMFFIAFKDILPE 184


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,440,402
Number of Sequences: 59808
Number of extensions: 439588
Number of successful extensions: 1117
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)