Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00081
         (787 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) riboso...   114   5e-26
At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A)             114   5e-26
At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) riboso...   107   8e-24
At4g35350.2 68417.m05022 cysteine endopeptidase, papain-type (XC...    37   0.017
At4g35350.1 68417.m05023 cysteine endopeptidase, papain-type (XC...    37   0.017
At1g29110.1 68414.m03563 cysteine proteinase, putative contains ...    32   0.38 
At5g58150.1 68418.m07278 leucine-rich repeat transmembrane prote...    31   0.87 
At2g34080.1 68415.m04172 cysteine proteinase, putative contains ...    30   2.0  
At1g29090.1 68414.m03561 peptidase C1A papain family protein con...    30   2.0  
At2g42920.1 68415.m05318 pentatricopeptide (PPR) repeat-containi...    28   6.1  
At2g27420.1 68415.m03314 cysteine proteinase, putative contains ...    28   6.1  

>At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) ribosomal
           protein L8, cytosolic, tomato, PIR1:R5TOL8
          Length = 258

 Score =  114 bits (275), Expect = 5e-26
 Identities = 53/70 (75%), Positives = 59/70 (84%)
 Frame = +1

Query: 550 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 729
           MGRVIRAQRKGAGSVF SHT  RKG  K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60

Query: 730 VHFRDPYKFK 759
           V FR P++FK
Sbjct: 61  VAFRHPFRFK 70


>At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A) 
          Length = 258

 Score =  114 bits (275), Expect = 5e-26
 Identities = 53/70 (75%), Positives = 59/70 (84%)
 Frame = +1

Query: 550 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 729
           MGRVIRAQRKGAGSVF SHT  RKG  K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60

Query: 730 VHFRDPYKFK 759
           V FR P++FK
Sbjct: 61  VTFRHPFRFK 70


>At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) ribosomal
           protein L8, cytosolic - Arabidopsis thaliana, PIR:T04582
          Length = 260

 Score =  107 bits (257), Expect = 8e-24
 Identities = 51/70 (72%), Positives = 58/70 (82%), Gaps = 1/70 (1%)
 Frame = +1

Query: 550 MGRVIRAQRKGA-GSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLA 726
           MGRVIRAQRKGA GSVF SHT  RKG  K RSLDY ER+GY+KG+V +IIHDPGRGAPLA
Sbjct: 1   MGRVIRAQRKGAAGSVFKSHTHHRKGPAKFRSLDYGERNGYLKGLVTEIIHDPGRGAPLA 60

Query: 727 VVHFRDPYKF 756
            V FR P+++
Sbjct: 61  RVAFRHPFRY 70


>At4g35350.2 68417.m05022 cysteine endopeptidase, papain-type (XCP1)
           identical to papain-type cysteine endopeptidase XCP1
           GI:6708181 from [Arabidopsis thaliana]
          Length = 288

 Score = 36.7 bits (81), Expect = 0.017
 Identities = 16/47 (34%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
 Frame = -2

Query: 396 PRHY-DLNQAKELFESFVKEHNREYKDDADRELHYQSFKKNLAEINQ 259
           P H  + ++  ELFES++ EH++ YK   ++   ++ F++NL  I+Q
Sbjct: 38  PEHLTNTDKLLELFESWMSEHSKAYKSVEEKVHRFEVFRENLMHIDQ 84


>At4g35350.1 68417.m05023 cysteine endopeptidase, papain-type (XCP1)
           identical to papain-type cysteine endopeptidase XCP1
           GI:6708181 from [Arabidopsis thaliana]
          Length = 355

 Score = 36.7 bits (81), Expect = 0.017
 Identities = 16/47 (34%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
 Frame = -2

Query: 396 PRHY-DLNQAKELFESFVKEHNREYKDDADRELHYQSFKKNLAEINQ 259
           P H  + ++  ELFES++ EH++ YK   ++   ++ F++NL  I+Q
Sbjct: 38  PEHLTNTDKLLELFESWMSEHSKAYKSVEEKVHRFEVFRENLMHIDQ 84


>At1g29110.1 68414.m03563 cysteine proteinase, putative contains
           similarity to cysteine protease SPCP1 GI:13491750 from
           [Ipomoea batatas]
          Length = 334

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 18/65 (27%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
 Frame = -2

Query: 456 VSV-ALLIATVVMASSADTDPPR-HYDLNQAK--ELFESFVKEHNREYKDDADRELHYQS 289
           VSV ++ +A  +++        R H  LN+    +  + ++ + +R YKD++++E+  + 
Sbjct: 2   VSVRSVFVALTILSMDLRISQARPHVTLNEQSIVDYHQQWMTQFSRVYKDESEKEMRLKV 61

Query: 288 FKKNL 274
           FKKNL
Sbjct: 62  FKKNL 66


>At5g58150.1 68418.m07278 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 785

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 22/67 (32%), Positives = 32/67 (47%)
 Frame = -2

Query: 549 DYDPWCRIRHESRTGTSKPVPLLIHCAKMNFVSVALLIATVVMASSADTDPPRHYDLNQA 370
           D  PW R+RH+   GT++ +  L H      V   +  AT+++ SS +   PR  D    
Sbjct: 612 DSAPW-RLRHKIALGTARALAFLHHGCIPPMVHGEVKAATILLDSSQE---PRLADFGLV 667

Query: 369 KELFESF 349
           K L E F
Sbjct: 668 KLLDEQF 674


>At2g34080.1 68415.m04172 cysteine proteinase, putative contains
           similarity to cysteine protease SPCP1 GI:13491750 from
           [Ipomoea batatas]
          Length = 345

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -2

Query: 357 ESFVKEHNREYKDDADRELHYQSFKKNLAEINQLTRR 247
           E ++   +REY+D+ ++ +    FKKNL  I    ++
Sbjct: 40  EQWMARFSREYRDELEKNMRRDVFKKNLKFIENFNKK 76


>At1g29090.1 68414.m03561 peptidase C1A papain family protein
           contains similarity to cysteine protease SPCP1
           GI:13491750 from [Ipomoea batatas]; contains Pfam
           profile PF00112: Papain family cysteine protease
          Length = 355

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/71 (23%), Positives = 37/71 (52%)
 Frame = -2

Query: 459 FVSVALLIATVVMASSADTDPPRHYDLNQAKELFESFVKEHNREYKDDADRELHYQSFKK 280
           F+ V+L I ++ +  S  T     ++   A E  + ++   +R Y D+ ++++ +  FKK
Sbjct: 15  FMLVSLTILSMNLKVSQATSRVTFHEPIVA-EHHQQWMTRFSRVYSDELEKQMRFDVFKK 73

Query: 279 NLAEINQLTRR 247
           NL  I +  ++
Sbjct: 74  NLKFIEKFNKK 84


>At2g42920.1 68415.m05318 pentatricopeptide (PPR) repeat-containing
           protein  and genefinder
          Length = 559

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +3

Query: 108 FVWNSIPID*SRRTYVFLAGSLNPNLLCCSSGV*SANLLMPNV 236
           FVWN+I    SR ++  +A S+  ++LC S  V    L  P+V
Sbjct: 90  FVWNTIIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSV 132


>At2g27420.1 68415.m03314 cysteine proteinase, putative contains
           similarity to cysteine protease SPCP1 GI:13491750 from
           [Ipomoea batatas]
          Length = 348

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 372 AKELFESFVKEHNREYKDDADRELHYQSFKKNL 274
           A E  E ++   NR Y D+ ++   +  FKKNL
Sbjct: 31  AIEKHEQWMARFNRVYSDETEKRNRFNIFKKNL 63


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,615,990
Number of Sequences: 28952
Number of extensions: 307295
Number of successful extensions: 788
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)