Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00080
         (317 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    27   0.91 
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    26   1.6  
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|...    26   1.6  
SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz...    25   3.7  
SPAC17C9.10 |stm1||G-protein coupled receptor Stm1|Schizosacchar...    24   6.4  
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa...    24   6.4  
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    23   8.5  
SPCC417.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    23   8.5  

>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 26.6 bits (56), Expect = 0.91
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +1

Query: 94  SVGGGAWPFLVGGAICLVNSGNERDSSLLNRRRYLGVRGLVSRNSLT 234
           ++  G    L  G + ++N G E D  L N  RYL V  L   N++T
Sbjct: 44  NIDAGTMSPLEHGEVFVLNDGGEVDLDLGNYERYLNVT-LTHDNNIT 89


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1210

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 142  DKSLHQLRTAMHHHPPNQERAVNLSILPV 56
            D +LH     + +H  + E A NLSILP+
Sbjct: 1061 DDNLHHGEIYLRNHILSDEMANNLSILPI 1089


>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 108 TTTHRIKKELLICQSFRCPGLVRFPVLSQIKP 13
           T   R+ K  +     RCP ++R+P L  IKP
Sbjct: 375 TAPSRLSKGFITEGGIRCPAIIRYPPL--IKP 404


>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
           S26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 277

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 136 ICLVNSGNERDSSLLNRRRYL 198
           +CL N    +D  LLNR RY+
Sbjct: 227 LCLWNHAYYKDYGLLNRSRYI 247


>SPAC17C9.10 |stm1||G-protein coupled receptor
           Stm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 37  KSHQARTPEGLTD*QLFLDSVGGGAWPFLV 126
           K+H+A++ EGL+     L SVG  ++ F +
Sbjct: 199 KNHKAKSTEGLSIIFFVLASVGNTSYAFSI 228


>SPAC3C7.06c |pit1||serine/threonine protein kinase
           Pit1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 650

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -3

Query: 39  FPVLSQIKPQAPL 1
           FPVL QI+P  PL
Sbjct: 441 FPVLPQIRPSTPL 453


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -1

Query: 146 TRQIAPPTKNGHAPPPTESRKSC*SVNPSGVR 51
           T  I PP +   +  P  S  S   +NPS VR
Sbjct: 43  TTFIKPPLETASSSTPIPSSSSSGVLNPSSVR 74


>SPCC417.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 100

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -2

Query: 193 NDAYLAG*SLVRYRN*PDKSLHQLRTAMHHHPPNQER 83
           ND+Y     +V + N     + Q  T++HH P  ++R
Sbjct: 23  NDSYTPYTYIVSFHNFVRFPIKQRNTSIHHAPNKRKR 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,135,390
Number of Sequences: 5004
Number of extensions: 19077
Number of successful extensions: 50
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)