Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00078
         (707 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0388 + 17076157-17076254,17076762-17076813,17077672-170778...    31   0.68 
10_08_0765 - 20421813-20423174,20423591-20423771,20423862-204241...    28   8.4  

>11_04_0388 +
           17076157-17076254,17076762-17076813,17077672-17077867,
           17078242-17078321,17078465-17078581,17078895-17078950,
           17079238-17079268,17079292-17079342,17080411-17080477,
           17080621-17080724,17080802-17080909,17081874-17081987
          Length = 357

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 4/106 (3%)
 Frame = +1

Query: 55  YFAMKLLLRFRDEYNRNPDPARRKDDINLLLKMRDEIVRELSLPASFIKDSLFYDVFXXX 234
           YFAM++L  +     RN   A   D    +L +R ++  ++SL  S I  +L   +    
Sbjct: 245 YFAMRVLENYESSEGRNACEASLSDR-PAVLALRKDMCDKMSLSESQIPTALLERLLAAG 303

Query: 235 XXXXXXXXXXXX----QEVVKAVSQREPPHNNMFFFNPIKCLGYTE 360
                           QEV+K++S +  P  N F+++     G  E
Sbjct: 304 KKQHPPVCAILGGILGQEVIKSISGKGDPIKNFFYYDAADGKGIAE 349


>10_08_0765 -
           20421813-20423174,20423591-20423771,20423862-20424117,
           20424768-20425095,20425218-20426156,20427015-20427761,
           20428517-20428789
          Length = 1361

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +3

Query: 255 RWSYWPGGGQSRQSEG 302
           RWS++PG G +R+S G
Sbjct: 936 RWSHFPGSGNTRRSNG 951


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,714,556
Number of Sequences: 37544
Number of extensions: 296978
Number of successful extensions: 495
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)