Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00078
         (707 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U49954-1|AAA93426.1|  388|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z48809-2|CAA88747.1|  406|Caenorhabditis elegans Hypothetical pr...    28   7.5  

>U49954-1|AAA93426.1|  388|Caenorhabditis elegans Hypothetical
           protein Y102E9.2 protein.
          Length = 388

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +1

Query: 109 DPARRKDDINLLLKMRDEIVRELSLPASFIKDSLF 213
           D A   D   LL+  RDE VR L  PA+ + DS F
Sbjct: 160 DVAFSPDGKRLLMADRDEKVRALRYPATSVIDSFF 194


>Z48809-2|CAA88747.1|  406|Caenorhabditis elegans Hypothetical
           protein T01E8.4 protein.
          Length = 406

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -1

Query: 209 NESLMKLAGSDNSRTISSRIFSSKLMSSFLRAGSGFLLYSSLKRNRSF 66
           ++  +KL  ++N   + +    S    SFL  G+  ++  SLKRN +F
Sbjct: 303 SDGKVKLYDANNFNVLQTYSVGSYTRQSFLEHGAHLIMARSLKRNYTF 350


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,133,721
Number of Sequences: 27780
Number of extensions: 294066
Number of successful extensions: 652
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)