Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00078
         (707 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    22   5.0  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   6.6  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    22   6.6  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   6.6  

>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -2

Query: 457 NQFKWSHFSSYN*TYICYSIFLSDRSNFID 368
           N + +S++++YN  Y  Y+  L    N+I+
Sbjct: 87  NNYNYSNYNNYNNNYNNYNKKLYYNINYIE 116


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 130 RLFFEPGQDSCYIHL*SVTGAS 65
           R+FFE  QDS Y  +  V GA+
Sbjct: 72  RMFFEFCQDSGYDKILQVLGAT 93


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -3

Query: 315 VMWWFPLTDGFDHLLANNSTDNSSSCCHNSKHIIKQRIFD 196
           V+ W     G   +L NN+T N      N + +  ++IFD
Sbjct: 74  VIEWVEKNLGAIDILINNATINIDVTLQNDEVLDWKKIFD 113


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 130 RLFFEPGQDSCYIHL*SVTGAS 65
           R+FFE  QDS Y  +  V GA+
Sbjct: 72  RMFFEFCQDSGYDKILQVLGAT 93


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,340
Number of Sequences: 438
Number of extensions: 3586
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)