Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00077
(788 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc... 31 0.25
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 28 1.3
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 27 2.3
SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha... 27 2.3
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar... 27 3.1
SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex s... 27 4.0
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 4.0
SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 27 4.0
SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ... 26 5.4
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 5.4
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 26 7.1
SPCPB16A4.06c |||sequence orphan|Schizosaccharomyces pombe|chr 3... 26 7.1
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 25 9.4
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ... 25 9.4
>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 636
Score = 30.7 bits (66), Expect = 0.25
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Frame = -1
Query: 662 SSRATTQGTRRTEPPYPPSGDGHSDPHGVPVAASLQLR-GVRLRLWHGFRYGIVQQISTL 486
S ++T + TEPP P S S P+G A+ L+ VR L + Q +++
Sbjct: 21 SLKSTPKARETTEPPPPSSQQPPSTPNGKEAASPSALKQNVRPSL-----NSVQQTPASI 75
Query: 485 SWQSSSPNLTSSTPHPVTLALLTSTPS 405
+SS N++ + P++ +++S P+
Sbjct: 76 DAVASSSNVSLQSQQPLSKPVVSSKPN 102
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 28.3 bits (60), Expect = 1.3
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = +2
Query: 230 DLRPCLASDIFGTPPTPAKPARGTWKTSSLSLRRATACLR 349
DL L +DIF T +P A W SS + CLR
Sbjct: 824 DLINLLYTDIFSTISSPRAKAAKMWLISSFCAMKTLICLR 863
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 27.5 bits (58), Expect = 2.3
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -1
Query: 698 RTPTPAYDSFKASSRA-TTQGTRRTEPPYP 612
++P+PA+ + + S A TT + R PPYP
Sbjct: 330 KSPSPAFTANRFSPAAPTTVSSERNAPPYP 359
>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 27.5 bits (58), Expect = 2.3
Identities = 18/71 (25%), Positives = 33/71 (46%)
Frame = -1
Query: 674 SFKASSRATTQGTRRTEPPYPPSGDGHSDPHGVPVAASLQLRGVRLRLWHGFRYGIVQQI 495
+F S ++ TR + Y PS + + + +A +Q+ R+W+ YGI+
Sbjct: 64 NFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYGILMG- 122
Query: 494 STLSWQSSSPN 462
S +S+PN
Sbjct: 123 SKGKKATSTPN 133
>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 27.1 bits (57), Expect = 3.1
Identities = 14/57 (24%), Positives = 27/57 (47%)
Frame = -1
Query: 674 SFKASSRATTQGTRRTEPPYPPSGDGHSDPHGVPVAASLQLRGVRLRLWHGFRYGIV 504
+F S ++ TR + Y PS + + + +A +Q+ R+W+ YGI+
Sbjct: 64 NFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYGIL 120
>SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex
subunit Tim8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 98
Score = 26.6 bits (56), Expect = 4.0
Identities = 11/45 (24%), Positives = 24/45 (53%)
Frame = +1
Query: 58 FLRNQTKKVIMC*LVHSFRNTVT*NFVGSLSQSVLIKEAQCVRFC 192
F+ ++ +KV + +H F +T +G++ + E QC++ C
Sbjct: 23 FIESEQQKVKLQQAIHQFTSTCWPKCIGNIGNKLDKSEEQCLQNC 67
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 26.6 bits (56), Expect = 4.0
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Frame = -1
Query: 476 SSSPNLTSSTPHPVTLALLTSTP--SLFLLHK**GTHLQDSPFLSVNTLLLSVGLTMMSS 303
+SS L SSTP + AL TSTP S +L+ T + S ++ +T + S T+++S
Sbjct: 853 TSSSVLNSSTPITSSTALNTSTPITSSSVLNS--STPITSSTVVNTSTPITS--STVVNS 908
Query: 302 RFPVPASPA 276
P+ +S A
Sbjct: 909 STPITSSTA 917
Score = 26.2 bits (55), Expect = 5.4
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Frame = -1
Query: 476 SSSPNLTSSTPHPVTLALLTSTP--SLFLLHK**GTHLQDSPFLSVNTLLLSVGLTMMSS 303
+SS L SSTP + AL TSTP S +L+ T + S L+ +T + S ++++S
Sbjct: 673 TSSSVLNSSTPITSSTALNTSTPITSSSVLNS--STAITSSTALNTSTPITS--SSVLNS 728
Query: 302 RFPVPASPA 276
P+ +S A
Sbjct: 729 STPITSSTA 737
Score = 25.4 bits (53), Expect = 9.4
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Frame = -1
Query: 476 SSSPNLTSSTPHPVTLALLTSTP--SLFLLHK**GTHLQDSPFLSVNTLLLSVGLTMMSS 303
+SS L SSTP + L TSTP S +L+ T + S L+ +T + S T+++S
Sbjct: 385 TSSSVLNSSTPITSSSILNTSTPITSSSVLNS--STPITSSSILNSSTPITS--STVLNS 440
Query: 302 RFPVPASPA 276
P+ +S A
Sbjct: 441 STPITSSTA 449
Score = 25.4 bits (53), Expect = 9.4
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Frame = -1
Query: 476 SSSPNLTSSTPHPVTLALLTSTP--SLFLLHK**GTHLQDSPFLSVNTLLLSVGLTMMSS 303
+SS L SSTP + AL TSTP S +L+ T + S L+ +T + S ++++S
Sbjct: 1957 TSSSVLNSSTPITSSTALNTSTPITSSSVLNS--STPITSSSVLNTSTPITS--SSVLNS 2012
Query: 302 RFPVPAS 282
P+ +S
Sbjct: 2013 STPITSS 2019
Score = 25.4 bits (53), Expect = 9.4
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Frame = -1
Query: 476 SSSPNLTSSTPHPVTLALLTSTP--SLFLLHK**GTHLQDSPFLSVNTLLLSVGLTMMSS 303
+SS L SSTP + AL TSTP S +L+ T + S ++ +T + S T+++S
Sbjct: 2461 TSSSVLNSSTPITSSTALNTSTPITSSSVLNS--STPITSSTVVNTSTPITS--STVVNS 2516
Query: 302 RFPVPAS 282
P+ +S
Sbjct: 2517 STPITSS 2523
Score = 25.4 bits (53), Expect = 9.4
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Frame = -1
Query: 476 SSSPNLTSSTPHPVTLALLTSTP--SLFLLHK**GTHLQDSPFLSVNTLLLSVGLTMMSS 303
+SS L SSTP + AL TSTP S +L+ T + S L+ +T + S ++++S
Sbjct: 2833 TSSSVLNSSTPITSSTALNTSTPITSSSVLNS--STPITSSTALNTSTSITS--SSVLNS 2888
Query: 302 RFPVPAS 282
P+ +S
Sbjct: 2889 STPITSS 2895
>SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 343
Score = 26.6 bits (56), Expect = 4.0
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = -1
Query: 722 VMTT*GCIRTPTPAYDSFKASSRATTQGTRRTEPPYPPSGDGHSDPHG 579
V +T G T P+Y F S+ +TQ T PPS S P+G
Sbjct: 42 VTSTAGPEATDDPSYSGFY-STVISTQNPEPTSASTPPSASASSLPNG 88
>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 423
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +3
Query: 504 HYPITEPVPKPQPDPS--KLKGCGYRNPMGVGV 596
H ++E +P+PDPS +K C + P+ V +
Sbjct: 18 HREVSEGSTQPKPDPSGATMKACVWDGPLNVKI 50
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 439 GWGVLDVRFGEEDCQESVEICCTIP*RNPCQSRSR 543
G G + R+ E+DCQ +E+ +P + P ++ R
Sbjct: 319 GRGFIKFRY-EKDCQNCLEMASQLPTQEPTEAEKR 352
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 25.8 bits (54), Expect = 7.1
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -1
Query: 491 TLSWQSSSPNLTSSTPHPVTLALLTST-PSLF 399
T SW SSS LT + VT A+ T+ P +F
Sbjct: 175 TFSWDSSSMQLTLTEGMAVTTAVYTNAIPQIF 206
>SPCPB16A4.06c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 126
Score = 25.8 bits (54), Expect = 7.1
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = +2
Query: 461 GSAKKTAKRAWRSAALSHNGTRAKAAAGPLEVEGMRLQEPHGGRSDHH 604
G + R WR+ L +G+RA A E R P G RS H
Sbjct: 21 GQLSTSPPRRWRNCTLQRHGSRASADEF-CEQYRSRSHGPQGRRSLEH 67
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = +3
Query: 495 DLLHYPITEPVPKPQP--DPSKLKGCG 569
DL+ Y P+P P+P D ++ K CG
Sbjct: 571 DLVKYNPANPIPVPRPRVDLTQCKSCG 597
>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 937
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -1
Query: 590 DPHGVPVAASLQLRGVRLRLWHGFRYGIVQQISTLSWQSSSP 465
D G P ++ +R +RL GF Y + IST+ + P
Sbjct: 879 DLKGAPTNFTVPIRDMRLSAGAGFIYPLAAAISTIPGLPTKP 920
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,272,046
Number of Sequences: 5004
Number of extensions: 68762
Number of successful extensions: 340
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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