Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00077
(788 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0847 - 6451525-6451678,6452870-6453066,6454300-6454591,645... 31 0.79
11_06_0386 + 23012139-23012530,23012773-23012955,23013094-230131... 31 1.4
07_01_0976 + 8226194-8226473,8227116-8227291,8227366-8227486,822... 29 3.2
01_05_0799 + 25334460-25334994,25335060-25335236,25335325-253354... 29 4.2
12_02_1130 + 26353501-26354218,26354878-26354967,26355080-26355555 28 7.4
11_01_0340 + 2534998-2535660 28 7.4
09_03_0041 + 11826788-11828002,11828101-11828563,11828668-118287... 28 7.4
05_05_0254 - 23638544-23640090,23640280-23640408,23640619-236406... 28 7.4
07_03_1182 - 24610862-24611637,24612223-24612340,24612441-246141... 28 9.7
07_03_0471 + 18501496-18502104,18503009-18503260,18503367-185035... 28 9.7
02_05_0415 + 28787353-28787496,28787658-28788204,28788297-287883... 28 9.7
02_03_0026 - 14045653-14045874,14047023-14047215,14047518-140476... 28 9.7
01_06_1533 + 38041499-38041681,38041853-38041985,38042816-380429... 28 9.7
01_05_0417 - 21961780-21962157 28 9.7
>06_01_0847 -
6451525-6451678,6452870-6453066,6454300-6454591,
6454622-6454654,6454869-6455102,6455204-6455259,
6455552-6456754
Length = 722
Score = 31.5 bits (68), Expect = 0.79
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +1
Query: 280 GEAGTGNLEDIIVKPTESNS--VFTDKNGESCKCVPYYLCNKNNEGVDVN 423
GEAG N+ D+I +PT ++T E CK V ++ K + V++N
Sbjct: 225 GEAGHENVPDLIEQPTGKGRIIIYTKLGCEDCKMVRSFMRQKMLKYVEIN 274
>11_06_0386 +
23012139-23012530,23012773-23012955,23013094-23013151,
23013828-23013872
Length = 225
Score = 30.7 bits (66), Expect = 1.4
Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = -2
Query: 301 GSPCRLR-RRGGRSEDVRSKAGSKVVSWARPTVTSTASKSER 179
GS CR R RRGGR ++ AGS AR + TS+AS +R
Sbjct: 52 GSACRRRHRRGGRRGCAKNGAGSARACGAR-SPTSSASSGQR 92
>07_01_0976 +
8226194-8226473,8227116-8227291,8227366-8227486,
8228684-8228757,8229269-8229332,8229969-8230039,
8230279-8230368,8230491-8230661,8231668-8231739
Length = 372
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 588 PPWGSCSRIPSTSRGPAAALARVPLWDS 505
PPW +C++ RGP A A PL S
Sbjct: 37 PPWSNCAKSGLPPRGPFATAADTPLGGS 64
>01_05_0799 + 25334460-25334994,25335060-25335236,25335325-25335447,
25335559-25335624,25335717-25336685,25336791-25336912,
25337156-25337549,25337888-25338009,25338253-25338646,
25338983-25339104,25339348-25339830,25340291-25340960,
25341713-25342224,25342484-25342540
Length = 1581
Score = 29.1 bits (62), Expect = 4.2
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 256 HLRNAPHAGEAGTGNLEDIIVKPTESNSVFTD 351
HL N + +GNLED++ KP+ + T+
Sbjct: 1173 HLPNMQYVAYDESGNLEDVVNKPSNKKTTLTE 1204
>12_02_1130 + 26353501-26354218,26354878-26354967,26355080-26355555
Length = 427
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +2
Query: 269 PPTPAKPARGTWKTSSLSLRRATACLRIRTGNLANASPTICVT 397
PP+P K T T+S S A + G++A+ S + C T
Sbjct: 138 PPSPGKAFSTTSDTTSASATGTAASASVGAGSVAHESSSRCAT 180
>11_01_0340 + 2534998-2535660
Length = 220
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = +1
Query: 265 NAPHAGEAGTGNLEDIIVKPTESNSVFTDKNGESCKCVPYYLCNKNNEGVDVNNASVTG 441
NAP G A + D KPT S+S + G + + C + G +++S +G
Sbjct: 39 NAPKPGRADAADRWDTHKKPTSSSSSSSSSTGSASRAA---ACERKEPGSPASSSSSSG 94
>09_03_0041 +
11826788-11828002,11828101-11828563,11828668-11828798,
11829227-11829577,11829723-11829879,11829968-11830260,
11830367-11830426,11830530-11830619,11830774-11830857
Length = 947
Score = 28.3 bits (60), Expect = 7.4
Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 6/120 (5%)
Frame = +2
Query: 257 IFGTPP---TPAKPARGTWK-TSSLSLRRATACLRIRTGNLANASPTICVTRTMKGWTLI 424
+F PP +P P T + T SL LRRATA ++++SP+ +
Sbjct: 4 LFPPPPHALSPKPPFPSTLRSTRSLRLRRATAAAAAAGAGVSSSSPSTSSPEKAPALD-V 62
Query: 425 TPA*RGGECWMS--GSAKKTAKRAWRSAALSHNGTRAKAAAGPLEVEGMRLQEPHGGRSD 598
RGG+ S S +K A R W + A S + A+ P + + + Q+P GG +
Sbjct: 63 ASGKRGGKKRRSLKPSFEKQAIRRWSARAPS------QRASFPWQ-QQQQQQQPGGGEGE 115
>05_05_0254 -
23638544-23640090,23640280-23640408,23640619-23640626,
23641442-23642682
Length = 974
Score = 28.3 bits (60), Expect = 7.4
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Frame = -1
Query: 704 CIRTPTP--AYDSFKASSRATTQGTRRTEPPYPPSGDGHSDPHGVPVAASLQLRGVRLRL 531
C + P+ A++ +SSR+TT + PP PP S VA + LRL
Sbjct: 518 CFQKPSSNMAHNDEASSSRSTTSSAAQPSPPPPPRLASASSSPMDAVAPARDFMAESLRL 577
Query: 530 WH 525
H
Sbjct: 578 VH 579
>07_03_1182 -
24610862-24611637,24612223-24612340,24612441-24614120,
24614253-24614320,24615370-24615550
Length = 940
Score = 27.9 bits (59), Expect = 9.7
Identities = 21/78 (26%), Positives = 33/78 (42%)
Frame = -1
Query: 680 YDSFKASSRATTQGTRRTEPPYPPSGDGHSDPHGVPVAASLQLRGVRLRLWHGFRYGIVQ 501
+ F R T RR P P G GH+ P A+ ++ L F + +
Sbjct: 34 FQIFDRRQRLLTARRRRPPPKMLPPGPGHTLPRSSSNVAAQSSSTSKIVLEKTFSKSMTE 93
Query: 500 QISTLSWQSSSPNLTSST 447
S+LS +SS + +SS+
Sbjct: 94 N-SSLSIESSRASCSSSS 110
>07_03_0471 + 18501496-18502104,18503009-18503260,18503367-18503537,
18503693-18503743,18503868-18503960,18504125-18504220,
18504318-18504368,18504452-18504570,18504909-18505017,
18505391-18505513,18505590-18505661,18505963-18506034,
18506125-18506191,18506260-18506402,18506494-18506565,
18506632-18506760,18507317-18507472,18507579-18507692,
18507791-18507889,18507974-18508051,18508402-18508536,
18509081-18509155,18509247-18509361,18509458-18509828,
18509903-18509965,18510049-18510120,18510285-18510413,
18510512-18510628,18510902-18511018
Length = 1289
Score = 27.9 bits (59), Expect = 9.7
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -1
Query: 620 PYPPSGDGHSDPHGVPVAASL 558
P+PP HS P+ +P SL
Sbjct: 1029 PFPPFAGAHSQPYAIPTRGSL 1049
>02_05_0415 +
28787353-28787496,28787658-28788204,28788297-28788392,
28788532-28788645,28788929-28789962,28790053-28790124
Length = 668
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 274 GGRSEDVRSKAGSKVVSWARPTVTSTAS 191
GG S++V S+ G +VVS A PT + S
Sbjct: 249 GGNSKEVESEEGEEVVSSAAPTELAVIS 276
>02_03_0026 -
14045653-14045874,14047023-14047215,14047518-14047618,
14050145-14050272,14050409-14050502,14050749-14051237,
14052622-14052915,14053602-14053732,14053829-14055440,
14055539-14055651,14055902-14056933,14057023-14057145,
14057250-14057688
Length = 1656
Score = 27.9 bits (59), Expect = 9.7
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 256 HLRNAPHAGEAGTGNLEDIIVKPTESNSVFTD 351
HL N + GNLED++ +P+ S + T+
Sbjct: 887 HLPNMQYVTYNEDGNLEDVVNRPSSSRTTLTE 918
>01_06_1533 +
38041499-38041681,38041853-38041985,38042816-38042954,
38043331-38043367,38045606-38045897,38046384-38046502
Length = 300
Score = 27.9 bits (59), Expect = 9.7
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = -1
Query: 692 PTPAYDSFKASSRATTQGTRRTEPPYPPSGDGHS 591
P P D +A+ + G +R+ PP P G S
Sbjct: 77 PAPVIDGRRANCNLASLGVQRSRPPTPQHGGARS 110
>01_05_0417 - 21961780-21962157
Length = 125
Score = 27.9 bits (59), Expect = 9.7
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = -1
Query: 725 PVMTT*GCIRTPTPAYDSFKASSRATTQGTRRTEPPYPPSGDGH 594
PV G IR S KA A Q ++ +PP PP DGH
Sbjct: 83 PVHGAYGVIRNLQQELASVKAEIAAIRQKQQQAQPP-PPPEDGH 125
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,185,506
Number of Sequences: 37544
Number of extensions: 566868
Number of successful extensions: 2826
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2795
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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