Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00077
(788 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132876-33|CAI79187.1| 1133|Caenorhabditis elegans Hypothetical... 30 1.6
AL132876-32|CAD56252.2| 1172|Caenorhabditis elegans Hypothetical... 30 1.6
Z78410-8|CAB01642.1| 556|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z78410-7|CAB01635.1| 652|Caenorhabditis elegans Hypothetical pr... 29 3.8
U97403-2|AAB52472.2| 649|Caenorhabditis elegans Hypothetical pr... 29 3.8
U04995-1|AAA56868.1| 652|Caenorhabditis elegans prohormone conv... 29 3.8
Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p... 28 6.6
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp... 28 6.6
>AL132876-33|CAI79187.1| 1133|Caenorhabditis elegans Hypothetical
protein Y105E8A.26b protein.
Length = 1133
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -1
Query: 695 TPTPAYDSFKASSRATTQGTRRTEPP--YPPSGDGHSDPH 582
TP+ S +SR QG ++T PP PP G+S P+
Sbjct: 879 TPSSMTSSSSGASRTAGQGQQQTAPPPRPPPVNSGNSSPY 918
>AL132876-32|CAD56252.2| 1172|Caenorhabditis elegans Hypothetical
protein Y105E8A.26a protein.
Length = 1172
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -1
Query: 695 TPTPAYDSFKASSRATTQGTRRTEPP--YPPSGDGHSDPH 582
TP+ S +SR QG ++T PP PP G+S P+
Sbjct: 918 TPSSMTSSSSGASRTAGQGQQQTAPPPRPPPVNSGNSSPY 957
>Z78410-8|CAB01642.1| 556|Caenorhabditis elegans Hypothetical
protein C51E3.7b protein.
Length = 556
Score = 29.1 bits (62), Expect = 3.8
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Frame = -1
Query: 662 SSRATTQGTRRTEPPYPPSGDGHSDPHGVPVAASLQLRGVRLRLWHGFRYGIVQQ----I 495
SSR + R + P D H D HG Q+ GV L H F +G++ +
Sbjct: 327 SSRNSLFDGRCRDFPSLGINDNHRDSHGNCSHFEWQMNGVGLEYNHLFGFGVLDAAEMVM 386
Query: 494 STLSWQSSSP 465
++W++S P
Sbjct: 387 LAMAWKTSPP 396
>Z78410-7|CAB01635.1| 652|Caenorhabditis elegans Hypothetical
protein C51E3.7a protein.
Length = 652
Score = 29.1 bits (62), Expect = 3.8
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Frame = -1
Query: 662 SSRATTQGTRRTEPPYPPSGDGHSDPHGVPVAASLQLRGVRLRLWHGFRYGIVQQ----I 495
SSR + R + P D H D HG Q+ GV L H F +G++ +
Sbjct: 423 SSRNSLFDGRCRDFPSLGINDNHRDSHGNCSHFEWQMNGVGLEYNHLFGFGVLDAAEMVM 482
Query: 494 STLSWQSSSP 465
++W++S P
Sbjct: 483 LAMAWKTSPP 492
>U97403-2|AAB52472.2| 649|Caenorhabditis elegans Hypothetical
protein T10E9.4 protein.
Length = 649
Score = 29.1 bits (62), Expect = 3.8
Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = +1
Query: 283 EAGTGNLEDIIVKPTESNSVFTDKNGESCKCVPYYLCNKNNE-GVDVNNASVTGWGVLDV 459
E G GN D + PT N F D++G + + C K + D+ + V G L +
Sbjct: 183 ECGDGNFCDSVYNPTFKNHRFLDRSGPKESSLQF--CYKQPDLKPDLKHVKV-DLG-LKL 238
Query: 460 RFGEEDCQESVEIC 501
EDC EIC
Sbjct: 239 CHYNEDCGNETEIC 252
>U04995-1|AAA56868.1| 652|Caenorhabditis elegans prohormone
convertase 2 protein.
Length = 652
Score = 29.1 bits (62), Expect = 3.8
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Frame = -1
Query: 662 SSRATTQGTRRTEPPYPPSGDGHSDPHGVPVAASLQLRGVRLRLWHGFRYGIVQQ----I 495
SSR + R + P D H D HG Q+ GV L H F +G++ +
Sbjct: 423 SSRNSLFDGRCRDFPSLGINDNHRDSHGNCSHFEWQMNGVGLEYNHLFGFGVLDAAEMVM 482
Query: 494 STLSWQSSSP 465
++W++S P
Sbjct: 483 LAMAWKTSPP 492
>Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical protein
K08F8.6 protein.
Length = 2862
Score = 28.3 bits (60), Expect = 6.6
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = -3
Query: 429 GVINVHPFIVLVTQIVGDAF-ARFPVLIRKHAVALRRLNDDVFQVPRAGFAGVGGV 265
G+ ++P V ++GDA A PV+ K A+ L DDV ++ G GVG +
Sbjct: 1042 GLNQIYPTPPSVQMLLGDAAQAHSPVMHTKSRYAMNTLEDDVERIAVPG--GVGSL 1095
>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
protein K08F8.6 protein.
Length = 2862
Score = 28.3 bits (60), Expect = 6.6
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = -3
Query: 429 GVINVHPFIVLVTQIVGDAF-ARFPVLIRKHAVALRRLNDDVFQVPRAGFAGVGGV 265
G+ ++P V ++GDA A PV+ K A+ L DDV ++ G GVG +
Sbjct: 1042 GLNQIYPTPPSVQMLLGDAAQAHSPVMHTKSRYAMNTLEDDVERIAVPG--GVGSL 1095
>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
subunit Med13 protein.
Length = 2862
Score = 28.3 bits (60), Expect = 6.6
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = -3
Query: 429 GVINVHPFIVLVTQIVGDAF-ARFPVLIRKHAVALRRLNDDVFQVPRAGFAGVGGV 265
G+ ++P V ++GDA A PV+ K A+ L DDV ++ G GVG +
Sbjct: 1042 GLNQIYPTPPSVQMLLGDAAQAHSPVMHTKSRYAMNTLEDDVERIAVPG--GVGSL 1095
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,638,401
Number of Sequences: 27780
Number of extensions: 422077
Number of successful extensions: 1814
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1794
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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