Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00076
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    27   2.1  
SPAC3H1.08c |||DUF1640 family protein|Schizosaccharomyces pombe|...    26   4.9  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    25   8.5  

>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
 Frame = -3

Query: 373 RSSCRSTFLTN---HGAPTA-NLQKRDCRDWRVSMCVRAA*AN-THSRKS*RALCKFFKV 209
           + S +ST   N   +G  T  NLQ   C+ +R   C        +HS ++ R +CK+F  
Sbjct: 20  KKSAKSTLPKNTPENGVSTVKNLQHVPCKFFRNGTCTAGENCPFSHSLETERPICKYFLK 79

Query: 208 SPCSEG 191
             C  G
Sbjct: 80  GNCKFG 85


>SPAC3H1.08c |||DUF1640 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 211

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 387 IRKYMKSASERYFDKAMRHDNRLI 458
           IRKY+++  E  FDK  +  ++LI
Sbjct: 98  IRKYLETIEENEFDKVRKSSDKLI 121


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 564 NAKVIGSDGSVRTCLGRRR 508
           N++ +GS GS  T LGRRR
Sbjct: 3   NSRSVGSTGSNNTPLGRRR 21


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,861,774
Number of Sequences: 5004
Number of extensions: 55165
Number of successful extensions: 144
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)