Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00076
(738 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X79683-1|CAA56130.1| 1798|Homo sapiens beta2/S laminin chain pro... 32 2.5
BC130617-1|AAI30618.1| 630|Homo sapiens CHAT protein protein. 31 4.3
BC130615-1|AAI30616.1| 630|Homo sapiens CHAT protein protein. 31 4.3
AF305909-1|AAK08955.1| 630|Homo sapiens choline acetyltransfera... 31 4.3
AF305908-1|AAK08954.1| 666|Homo sapiens choline acetyltransfera... 31 4.3
AF305907-1|AAK08953.1| 748|Homo sapiens choline acetyltransfera... 31 4.3
AF305906-3|AAK08952.1| 630|Homo sapiens choline acetyltransfera... 31 4.3
AF305906-2|AAK08951.1| 666|Homo sapiens choline acetyltransfera... 31 4.3
AF305906-1|AAK08950.1| 748|Homo sapiens choline acetyltransfera... 31 4.3
Z68155-1|CAA92279.1| 1798|Homo sapiens laminin beta 2 chain prot... 30 10.0
S77512-1|AAB34682.2| 1798|Homo sapiens laminin beta 2 chain prot... 30 10.0
S45018-1|AAB23557.2| 559|Homo sapiens choline acetyltransferase... 30 10.0
>X79683-1|CAA56130.1| 1798|Homo sapiens beta2/S laminin chain
protein.
Length = 1798
Score = 31.9 bits (69), Expect = 2.5
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -1
Query: 213 KCHLVPKGHFTPLTDHGVESTENKRGTVTD 124
+C V G+F P DH + EN RG V D
Sbjct: 551 RCEQVQPGYFRPFLDHLIWEAENTRGQVLD 580
>BC130617-1|AAI30618.1| 630|Homo sapiens CHAT protein protein.
Length = 630
Score = 31.1 bits (67), Expect = 4.3
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +3
Query: 276 THIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSASERYFDKAMR 440
T+ D+L ++ C + + AP V D H L L Y K+ + R++DK+++
Sbjct: 255 TNRDSLDMIERCICLVCLDAPGGVELSDTHRALQLLHGGGYSKNGANRWYDKSLQ 309
>BC130615-1|AAI30616.1| 630|Homo sapiens CHAT protein protein.
Length = 630
Score = 31.1 bits (67), Expect = 4.3
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +3
Query: 276 THIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSASERYFDKAMR 440
T+ D+L ++ C + + AP V D H L L Y K+ + R++DK+++
Sbjct: 255 TNRDSLDMIERCICLVCLDAPGGVELSDTHRALQLLHGGGYSKNGANRWYDKSLQ 309
>AF305909-1|AAK08955.1| 630|Homo sapiens choline acetyltransferase
isoform R protein.
Length = 630
Score = 31.1 bits (67), Expect = 4.3
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +3
Query: 276 THIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSASERYFDKAMR 440
T+ D+L ++ C + + AP V D H L L Y K+ + R++DK+++
Sbjct: 255 TNRDSLDMIERCICLVCLDAPGGVELSDTHRALQLLHGGGYSKNGANRWYDKSLQ 309
>AF305908-1|AAK08954.1| 666|Homo sapiens choline acetyltransferase
isoform S protein.
Length = 666
Score = 31.1 bits (67), Expect = 4.3
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +3
Query: 276 THIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSASERYFDKAMR 440
T+ D+L ++ C + + AP V D H L L Y K+ + R++DK+++
Sbjct: 291 TNRDSLDMIERCICLVCLDAPGGVELSDTHRALQLLHGGGYSKNGANRWYDKSLQ 345
>AF305907-1|AAK08953.1| 748|Homo sapiens choline acetyltransferase
isoform M protein.
Length = 748
Score = 31.1 bits (67), Expect = 4.3
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +3
Query: 276 THIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSASERYFDKAMR 440
T+ D+L ++ C + + AP V D H L L Y K+ + R++DK+++
Sbjct: 373 TNRDSLDMIERCICLVCLDAPGGVELSDTHRALQLLHGGGYSKNGANRWYDKSLQ 427
>AF305906-3|AAK08952.1| 630|Homo sapiens choline acetyltransferase
isoform R protein.
Length = 630
Score = 31.1 bits (67), Expect = 4.3
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +3
Query: 276 THIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSASERYFDKAMR 440
T+ D+L ++ C + + AP V D H L L Y K+ + R++DK+++
Sbjct: 255 TNRDSLDMIERCICLVCLDAPGGVELSDTHRALQLLHGGGYSKNGANRWYDKSLQ 309
>AF305906-2|AAK08951.1| 666|Homo sapiens choline acetyltransferase
isoform S protein.
Length = 666
Score = 31.1 bits (67), Expect = 4.3
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +3
Query: 276 THIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSASERYFDKAMR 440
T+ D+L ++ C + + AP V D H L L Y K+ + R++DK+++
Sbjct: 291 TNRDSLDMIERCICLVCLDAPGGVELSDTHRALQLLHGGGYSKNGANRWYDKSLQ 345
>AF305906-1|AAK08950.1| 748|Homo sapiens choline acetyltransferase
isoform M protein.
Length = 748
Score = 31.1 bits (67), Expect = 4.3
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +3
Query: 276 THIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSASERYFDKAMR 440
T+ D+L ++ C + + AP V D H L L Y K+ + R++DK+++
Sbjct: 373 TNRDSLDMIERCICLVCLDAPGGVELSDTHRALQLLHGGGYSKNGANRWYDKSLQ 427
>Z68155-1|CAA92279.1| 1798|Homo sapiens laminin beta 2 chain
protein.
Length = 1798
Score = 29.9 bits (64), Expect = 10.0
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 213 KCHLVPKGHFTPLTDHGVESTENKRGTVTD 124
+C V G+F P DH + E+ RG V D
Sbjct: 551 RCEQVQPGYFRPFLDHLIWEAEDTRGQVLD 580
>S77512-1|AAB34682.2| 1798|Homo sapiens laminin beta 2 chain
protein.
Length = 1798
Score = 29.9 bits (64), Expect = 10.0
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 213 KCHLVPKGHFTPLTDHGVESTENKRGTVTD 124
+C V G+F P DH + E+ RG V D
Sbjct: 551 RCEQVQPGYFRPFLDHLIWEAEDTRGQVLD 580
>S45018-1|AAB23557.2| 559|Homo sapiens choline acetyltransferase
protein.
Length = 559
Score = 29.9 bits (64), Expect = 10.0
Identities = 15/55 (27%), Positives = 29/55 (52%)
Frame = +3
Query: 276 THIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSASERYFDKAMR 440
T+ D+L ++ C + + AP + D H L L Y K+ + R++DK+++
Sbjct: 263 TNRDSLDMIERCICLVCLDAPGGLELSDTHRALQLLHGGGYSKNGANRWYDKSLQ 317
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,938,215
Number of Sequences: 237096
Number of extensions: 2266913
Number of successful extensions: 4214
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4214
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8791154398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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