Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00076
(738 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 64 1e-10
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 64 1e-10
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 62 6e-10
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 56 4e-08
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 56 4e-08
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 56 4e-08
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 50 4e-06
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 48 1e-05
AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p pro... 48 1e-05
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 42 9e-04
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 42 0.001
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 42 0.001
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 42 0.001
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 42 0.001
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 42 0.001
X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein ( Dros... 39 0.006
U14102-1|AAC46495.1| 299|Drosophila melanogaster putative rever... 39 0.006
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 39 0.006
AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein ... 39 0.006
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 39 0.006
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 39 0.006
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 39 0.006
AJ278684-2|CAB99192.1| 989|Drosophila melanogaster endonuclease... 29 6.6
BT012510-1|AAS93781.1| 284|Drosophila melanogaster AT05186p pro... 29 8.7
AE014296-3722|AAN12204.1| 284|Drosophila melanogaster CG32462-P... 29 8.7
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 64.5 bits (150), Expect = 1e-10
Identities = 26/76 (34%), Positives = 45/76 (59%)
Frame = +1
Query: 25 ITLFRQPIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNK 204
+ + PI W ++YLG+ D +TF+ HI + + I+ LYP+I ++SK+S+ NK
Sbjct: 757 LRILDSPIQWVDNIRYLGIIFDKKLTFKYHINNTIMKVNKIICTLYPLINRKSKLSISNK 816
Query: 205 VTL*KTCIRPVMTYAS 252
+ + KT P++ Y S
Sbjct: 817 IIIFKTIFNPILMYGS 832
Score = 32.7 bits (71), Expect = 0.54
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +3
Query: 255 VFAHAARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRK 395
V+ A+THI LQ Q++ +L + P++ LH G++ +++
Sbjct: 834 VWGRCAQTHIKKLQICQNKLLKLIMNLPYYTNTKYLHIKAGVQKVQQ 880
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 64.5 bits (150), Expect = 1e-10
Identities = 26/76 (34%), Positives = 45/76 (59%)
Frame = +1
Query: 25 ITLFRQPIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNK 204
+ + PI W ++YLG+ D +TF+ HI + + I+ LYP+I ++SK+S+ NK
Sbjct: 705 LRILDSPIQWVDNIRYLGIIFDKKLTFKYHINNTIMKVNKIICTLYPLINRKSKLSISNK 764
Query: 205 VTL*KTCIRPVMTYAS 252
+ + KT P++ Y S
Sbjct: 765 IIIFKTIFNPILMYGS 780
Score = 32.7 bits (71), Expect = 0.54
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +3
Query: 255 VFAHAARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRK 395
V+ A+THI LQ Q++ +L + P++ LH G++ +++
Sbjct: 782 VWGRCAQTHIKKLQICQNKLLKLIMNLPYYTNTKYLHIKAGVQKVQQ 828
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown
protein.
Length = 908
Score = 62.5 bits (145), Expect = 6e-10
Identities = 29/81 (35%), Positives = 44/81 (54%)
Frame = +1
Query: 4 RRNFTPPITLFRQPIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRS 183
+R PP+ + P+P KYLGV LD +TF H+ +R R + + Y ++ RS
Sbjct: 725 KRRTPPPVYIEEVPVPQPNAAKYLGVLLDRRLTFSKHVTDIRTRLRAKVAKHYWLLSSRS 784
Query: 184 KMSLRNKVTL*KTCIRPVMTY 246
K+SL NK+T+ K + P Y
Sbjct: 785 KLSLSNKLTIYKQILAPNWKY 805
Score = 60.5 bits (140), Expect = 2e-09
Identities = 28/70 (40%), Positives = 40/70 (57%)
Frame = +3
Query: 255 VFAHAARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSASERYFDKA 434
++ A +HI +Q++Q++ RL G WFVRN LH DL L ++ + S RY D+
Sbjct: 809 IWGLACDSHIKRIQAIQNKVARLITGCEWFVRNTTLHRDLKLATVFDEINKHSSRYHDRL 868
Query: 435 MRHDNRLIVA 464
RH NRL A
Sbjct: 869 ERHRNRLASA 878
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 56.4 bits (130), Expect = 4e-08
Identities = 23/67 (34%), Positives = 42/67 (62%)
Frame = +3
Query: 255 VFAHAARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSASERYFDKA 434
++ +A+R++ID +Q QSR R+ GAPW++RN ++H DL ++ + + + +Y +K
Sbjct: 800 LWGNASRSNIDIIQRAQSRILRIITGAPWYLRNENIHRDLKIKLVIEVIAEKKTKYNEKL 859
Query: 435 MRHDNRL 455
H N L
Sbjct: 860 TTHTNPL 866
Score = 52.0 bits (119), Expect = 8e-07
Identities = 29/78 (37%), Positives = 42/78 (53%)
Frame = +1
Query: 19 PPITLFRQPIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLR 198
PP+ L IP A +V YLGV LD +T+R HI++ L+ +I RS +SL
Sbjct: 721 PPLVLNNICIPQADEVTYLGVHLDRRLTWRKHIEAKSKHLKLKARNLHWLINARSPLSLE 780
Query: 199 NKVTL*KTCIRPVMTYAS 252
K L + ++P+ TY S
Sbjct: 781 FKALLYNSVLKPIWTYGS 798
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding
protein, 3' end. ).
Length = 858
Score = 56.4 bits (130), Expect = 4e-08
Identities = 30/82 (36%), Positives = 47/82 (57%)
Frame = +1
Query: 7 RNFTPPITLFRQPIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSK 186
R PP+ L P+P A +V YLGV LD +T+R HI++ + + L+ +I S
Sbjct: 719 RQDCPPLLLNSIPLPKADEVTYLGVHLDRRLTWRRHIEAKKTQLKLKANNLHWLINSGSP 778
Query: 187 MSLRNKVTL*KTCIRPVMTYAS 252
+SL +KV L + ++P+ TY S
Sbjct: 779 LSLDHKVLLYNSILKPIWTYGS 800
Score = 46.4 bits (105), Expect = 4e-05
Identities = 18/56 (32%), Positives = 34/56 (60%)
Frame = +3
Query: 255 VFAHAARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSASERY 422
++ +A+ ++ID +Q QS+ R GAPW+VR+ ++ DL + S+ + E+Y
Sbjct: 802 LWGNASNSNIDIIQRAQSKILRTITGAPWYVRSENIQRDLNIPSVTNAITELKEKY 857
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p protein.
Length = 888
Score = 56.4 bits (130), Expect = 4e-08
Identities = 23/67 (34%), Positives = 42/67 (62%)
Frame = +3
Query: 255 VFAHAARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSASERYFDKA 434
++ +A+R++ID +Q QSR R+ GAPW++RN ++H DL ++ + + + +Y +K
Sbjct: 800 LWGNASRSNIDIIQRAQSRILRIITGAPWYLRNENIHRDLKIKLVIEVIAEKKTKYNEKL 859
Query: 435 MRHDNRL 455
H N L
Sbjct: 860 TTHTNPL 866
Score = 52.0 bits (119), Expect = 8e-07
Identities = 29/78 (37%), Positives = 42/78 (53%)
Frame = +1
Query: 19 PPITLFRQPIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLR 198
PP+ L IP A +V YLGV LD +T+R HI++ L+ +I RS +SL
Sbjct: 721 PPLVLNNICIPQADEVTYLGVHLDRRLTWRKHIEAKSKHLKLKARNLHWLINARSPLSLE 780
Query: 199 NKVTL*KTCIRPVMTYAS 252
K L + ++P+ TY S
Sbjct: 781 FKALLYNSVLKPIWTYGS 798
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p
protein.
Length = 906
Score = 49.6 bits (113), Expect = 4e-06
Identities = 26/77 (33%), Positives = 42/77 (54%)
Frame = +1
Query: 16 TPPITLFRQPIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSL 195
T PI L + + KYLG+TLD +TF PH+K+ R + +L ++ ++S M+L
Sbjct: 735 TAPIELEGVILDQPSQAKYLGITLDKRLTFGPHLKATTRRCYQRMQQLRWLLNRKSTMTL 794
Query: 196 RNKVTL*KTCIRPVMTY 246
R K + C+ P+ Y
Sbjct: 795 RAKRAVYVHCVAPIWLY 811
Score = 47.6 bits (108), Expect = 2e-05
Identities = 21/67 (31%), Positives = 38/67 (56%)
Frame = +3
Query: 255 VFAHAARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSASERYFDKA 434
++ AA+++ + +Q LQ+R R P++VR LH DL L ++ + + + RY D+
Sbjct: 815 IWGIAAKSNYNRIQVLQNRAMRAITDCPYYVRGTTLHRDLNLHTVEEQISRHTSRYSDRL 874
Query: 435 MRHDNRL 455
RH + L
Sbjct: 875 RRHHSIL 881
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 48.0 bits (109), Expect = 1e-05
Identities = 26/81 (32%), Positives = 44/81 (54%)
Frame = +1
Query: 4 RRNFTPPITLFRQPIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRS 183
R P ++L + I + KYLG+TLD +TF HI +++ + R+ +I R+
Sbjct: 730 RTGSCPGVSLNGRLIRHHQAYKYLGITLDRKLTFSRHITNIQQAFRTKVARMSWLIAPRN 789
Query: 184 KMSLRNKVTL*KTCIRPVMTY 246
K+SL KV + K+ + P + Y
Sbjct: 790 KLSLGCKVNIYKSILAPCLFY 810
Score = 48.0 bits (109), Expect = 1e-05
Identities = 19/67 (28%), Positives = 41/67 (61%)
Frame = +3
Query: 255 VFAHAARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSASERYFDKA 434
V+ AA++H++ ++ LQ++ R GAPW++R D+ DL + + +++ +++Y ++
Sbjct: 814 VYGIAAKSHLNKIRILQAKTLRRISGAPWYMRTRDIERDLKVPKLGDKLQNIAQKYMERL 873
Query: 435 MRHDNRL 455
H N L
Sbjct: 874 NVHPNSL 880
>AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p
protein.
Length = 718
Score = 48.0 bits (109), Expect = 1e-05
Identities = 26/81 (32%), Positives = 44/81 (54%)
Frame = +1
Query: 4 RRNFTPPITLFRQPIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRS 183
R P ++L + I + KYLG+TLD +TF HI +++ + R+ +I R+
Sbjct: 532 RTGSCPGVSLNGRLIRHHQAYKYLGITLDRKLTFSRHITNIQQAFRTKVARMSWLIAPRN 591
Query: 184 KMSLRNKVTL*KTCIRPVMTY 246
K+SL KV + K+ + P + Y
Sbjct: 592 KLSLGCKVNIYKSILAPCLFY 612
Score = 48.0 bits (109), Expect = 1e-05
Identities = 19/67 (28%), Positives = 41/67 (61%)
Frame = +3
Query: 255 VFAHAARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSASERYFDKA 434
V+ AA++H++ ++ LQ++ R GAPW++R D+ DL + + +++ +++Y ++
Sbjct: 616 VYGIAAKSHLNKIRILQAKTLRRISGAPWYMRTRDIERDLKVPKLGDKLQNIAQKYLERL 675
Query: 435 MRHDNRL 455
H N L
Sbjct: 676 NVHPNSL 682
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 41.9 bits (94), Expect = 9e-04
Identities = 21/70 (30%), Positives = 37/70 (52%)
Frame = +1
Query: 40 QPIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTL*K 219
Q I K YLGVTLD+ +T H+ + + + +L ++ RSK+ + K+ + K
Sbjct: 801 QTIKKESKQSYLGVTLDSKLTLSSHVTKLLGKYSTAYRKLTWILNGRSKLPTKTKILILK 860
Query: 220 TCIRPVMTYA 249
+ + P+ YA
Sbjct: 861 SVLSPIWQYA 870
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial
cds. ).
Length = 964
Score = 41.5 bits (93), Expect = 0.001
Identities = 21/70 (30%), Positives = 36/70 (51%)
Frame = +1
Query: 40 QPIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTL*K 219
Q I K YLGV LD+ +T PH+ V + ++ ++ +RSK+ K+ + K
Sbjct: 673 QAIKKESKQSYLGVILDSKLTLSPHVTKVVGKYLTAYRKMSWILNERSKLPTNTKMLILK 732
Query: 220 TCIRPVMTYA 249
+ + P+ YA
Sbjct: 733 SVLSPIWQYA 742
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 41.5 bits (93), Expect = 0.001
Identities = 21/70 (30%), Positives = 36/70 (51%)
Frame = +1
Query: 40 QPIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTL*K 219
Q I K YLGV LD+ +T PH+ V + ++ ++ +RSK+ K+ + K
Sbjct: 789 QAIKKESKQSYLGVILDSKLTLSPHVTKVVGKYLTAYRKMSWILNERSKLPTNTKMLILK 848
Query: 220 TCIRPVMTYA 249
+ + P+ YA
Sbjct: 849 SVLSPIWQYA 858
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 41.5 bits (93), Expect = 0.001
Identities = 21/70 (30%), Positives = 36/70 (51%)
Frame = +1
Query: 40 QPIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTL*K 219
Q I K YLGV LD+ +T PH+ V + ++ ++ +RSK+ K+ + K
Sbjct: 789 QAIKKESKQSYLGVILDSKLTLSPHVTKVVGKYLTAYRKMSWILNERSKLPTNTKMLILK 848
Query: 220 TCIRPVMTYA 249
+ + P+ YA
Sbjct: 849 SVLSPIWQYA 858
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 41.5 bits (93), Expect = 0.001
Identities = 21/70 (30%), Positives = 36/70 (51%)
Frame = +1
Query: 40 QPIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTL*K 219
Q I K YLGV LD+ +T PH+ V + ++ ++ +RSK+ K+ + K
Sbjct: 751 QAIKKESKQSYLGVILDSKLTLSPHVTKVVGKYLTAYRKMSWILNERSKLPTNTKMLILK 810
Query: 220 TCIRPVMTYA 249
+ + P+ YA
Sbjct: 811 SVLSPIWQYA 820
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 41.5 bits (93), Expect = 0.001
Identities = 21/70 (30%), Positives = 36/70 (51%)
Frame = +1
Query: 40 QPIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTL*K 219
Q I K YLGV LD+ +T PH+ V + ++ ++ +RSK+ K+ + K
Sbjct: 789 QAIKKESKQSYLGVILDSKLTLSPHVTKVVGKYLTAYRKMSWILNERSKLPTNTKMLILK 848
Query: 220 TCIRPVMTYA 249
+ + P+ YA
Sbjct: 849 SVLSPIWQYA 858
>X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein (
Drosophila melanogasterDNA for type I retrotransposable
element R1Dm. ).
Length = 1021
Score = 39.1 bits (87), Expect = 0.006
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +1
Query: 19 PPITLFRQPIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRL 159
P + + +P+ R +YLG+T+ M F HI S+R R ++G L
Sbjct: 719 PTVRFAGRNLPYVRSCRYLGITVSEGMKFLTHIASLRQRMTGVVGAL 765
>U14102-1|AAC46495.1| 299|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 299
Score = 39.1 bits (87), Expect = 0.006
Identities = 19/70 (27%), Positives = 36/70 (51%)
Frame = +1
Query: 40 QPIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTL*K 219
Q I K YLGV LD+ +T H+ + + ++ ++ +RSK+ + K+ + K
Sbjct: 4 QVIKIESKQSYLGVILDSKLTLSSHVTKLMGKYTTAYRKMTWILNRRSKLPTKTKMLILK 63
Query: 220 TCIRPVMTYA 249
+ + P+ YA
Sbjct: 64 SVLSPIWQYA 73
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 39.1 bits (87), Expect = 0.006
Identities = 19/70 (27%), Positives = 36/70 (51%)
Frame = +1
Query: 40 QPIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTL*K 219
Q I K YLGV LD+ +T H+ + + ++ ++ +RSK+ + K+ + K
Sbjct: 789 QVIKIESKQSYLGVILDSKLTLSSHVTKLMGKYTTAYRKMTWILNRRSKLPTKTKMLILK 848
Query: 220 TCIRPVMTYA 249
+ + P+ YA
Sbjct: 849 SVLSPIWQYA 858
>AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein
protein.
Length = 656
Score = 39.1 bits (87), Expect = 0.006
Identities = 23/79 (29%), Positives = 39/79 (49%)
Frame = +1
Query: 13 FTPPITLFRQPIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMS 192
+TPP+ + Q K +YLG+ LD +TF H+ ++ + +L +I K S +
Sbjct: 345 YTPPL-INGQRAAKLNKQRYLGLMLDRRLTFCAHMTLLKGKTIAAYKKLEWLIGKNSHLP 403
Query: 193 LRNKVTL*KTCIRPVMTYA 249
K+ L K + P+ YA
Sbjct: 404 KNAKILLWKQIVSPIWHYA 422
Score = 35.9 bits (79), Expect = 0.058
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = +3
Query: 276 THIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSASERYFDKAMRHDNRL 455
T +Q++++++ R + A + R D+ ++S + AS+RY + H+N L
Sbjct: 433 TQAKKIQTMENKYIRRIINASRYTRQADIRTKYNIKSFDETFDKASQRYANSLTDHENPL 492
Query: 456 I 458
I
Sbjct: 493 I 493
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 39.1 bits (87), Expect = 0.006
Identities = 23/79 (29%), Positives = 39/79 (49%)
Frame = +1
Query: 13 FTPPITLFRQPIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMS 192
+TPP+ + Q K +YLG+ LD +TF H+ ++ + +L +I K S +
Sbjct: 792 YTPPL-INGQRAAKLNKQRYLGLMLDRRLTFCAHMTLLKGKTIAAYKKLEWLIGKNSHLP 850
Query: 193 LRNKVTL*KTCIRPVMTYA 249
K+ L K + P+ YA
Sbjct: 851 KNAKILLWKQIVSPIWHYA 869
Score = 36.3 bits (80), Expect = 0.044
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = +3
Query: 276 THIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSASERYFDKAMRHDNRL 455
T +Q++++++ R + A + R D+ ++S + AS+RY + H+N L
Sbjct: 880 TQAKKIQTMENKYIRRIINASRYTRQADIRTKYNIKSFDEIFDKASQRYANSLTDHENPL 939
Query: 456 I 458
I
Sbjct: 940 I 940
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 39.1 bits (87), Expect = 0.006
Identities = 23/79 (29%), Positives = 39/79 (49%)
Frame = +1
Query: 13 FTPPITLFRQPIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMS 192
+TPP+ + Q K +YLG+ LD +TF H+ ++ + +L +I K S +
Sbjct: 792 YTPPL-INGQRAAKLNKQRYLGLMLDRRLTFCAHMTLLKGKTIAAYKKLEWLIGKNSHLP 850
Query: 193 LRNKVTL*KTCIRPVMTYA 249
K+ L K + P+ YA
Sbjct: 851 KNAKILLWKQIVSPIWHYA 869
Score = 36.3 bits (80), Expect = 0.044
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = +3
Query: 276 THIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSASERYFDKAMRHDNRL 455
T +Q++++++ R + A + R D+ ++S + AS+RY + H+N L
Sbjct: 880 TQAKKIQTMENKYIRRIINASRYTRQADIRTKYNIKSFDEIFDKASQRYANSLTDHENPL 939
Query: 456 I 458
I
Sbjct: 940 I 940
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 39.1 bits (87), Expect = 0.006
Identities = 23/79 (29%), Positives = 39/79 (49%)
Frame = +1
Query: 13 FTPPITLFRQPIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMS 192
+TPP+ + Q K +YLG+ LD +TF H+ ++ + +L +I K S +
Sbjct: 792 YTPPL-INGQRAAKLNKQRYLGLMLDRRLTFCAHMTLLKGKTIAAYKKLEWLIGKNSHLP 850
Query: 193 LRNKVTL*KTCIRPVMTYA 249
K+ L K + P+ YA
Sbjct: 851 KNAKILLWKQIVSPIWHYA 869
Score = 36.3 bits (80), Expect = 0.044
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = +3
Query: 276 THIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSASERYFDKAMRHDNRL 455
T +Q++++++ R + A + R D+ ++S + AS+RY + H+N L
Sbjct: 880 TQAKKIQTMENKYIRRIINASRYTRQADIRTKYNIKSFDEIFDKASQRYANSLTDHENPL 939
Query: 456 I 458
I
Sbjct: 940 I 940
>AJ278684-2|CAB99192.1| 989|Drosophila melanogaster
endonuclease/reverse transcriptase protein.
Length = 989
Score = 29.1 bits (62), Expect = 6.6
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +1
Query: 55 ARKVKYLGVTLDASMTFRPHIKSVRDRAAF---ILGRLYPMI 171
A +KYLGV +D ++F+ H + +AA L R+ P +
Sbjct: 714 AETLKYLGVLIDRRLSFKAHARYASKKAAMTAAALARIMPNV 755
>BT012510-1|AAS93781.1| 284|Drosophila melanogaster AT05186p
protein.
Length = 284
Score = 28.7 bits (61), Expect = 8.7
Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 8/93 (8%)
Frame = +3
Query: 246 RECVFAHAARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLG-------LESIRKYMK 404
R CV A + ++ L S L APWF R V H LG + S +++
Sbjct: 61 RNCVAARSQNFDVELTGRLWSLSGGLHPRAPWFDRKVRGHQTLGCCVVACCVASTFRHLG 120
Query: 405 SASERYFDKAMRHDNRLIVADADYSPNPD-HAG 500
S + D + + NR A + S D H+G
Sbjct: 121 EWSGKLLDAIVVNGNRYFRASVEQSERWDLHSG 153
>AE014296-3722|AAN12204.1| 284|Drosophila melanogaster CG32462-PA
protein.
Length = 284
Score = 28.7 bits (61), Expect = 8.7
Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 8/93 (8%)
Frame = +3
Query: 246 RECVFAHAARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLG-------LESIRKYMK 404
R CV A + ++ L S L APWF R V H LG + S +++
Sbjct: 61 RNCVAARSQNFDVELTGRLWSLSGGLHPRAPWFDRKVRGHQTLGCCVVACCVASTFRHLG 120
Query: 405 SASERYFDKAMRHDNRLIVADADYSPNPD-HAG 500
S + D + + NR A + S D H+G
Sbjct: 121 EWSGKLLDAIVVNGNRYFRASVEQSERWDLHSG 153
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,438,014
Number of Sequences: 53049
Number of extensions: 674182
Number of successful extensions: 1520
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1520
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3334818762
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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