Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00074
         (813 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb...    28   1.8  
SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc...    28   1.8  
SPCC1494.08c |||conserved fungal protein|Schizosaccharomyces pom...    26   5.5  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    26   5.5  
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    25   9.7  

>SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 710

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = -3

Query: 268 VGSFNSDSIHITFIIRVCSLPK*LNLDVELT-FSYYVILIIAHLLQALVSPFLVCIKVLS 92
           V +  SDSI +  I R+  +      +   T FS+++IL+   LL A+ S F+V + +L+
Sbjct: 295 VTTSTSDSITLRGIKRISYMMGIETTNFFATGFSFFIILLFFSLLVAMASRFIVEMVLLA 354

Query: 91  KSN 83
             N
Sbjct: 355 SRN 357


>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
 Frame = -3

Query: 283 VRGIAVGSFNSDSIHITFIIRVCSLPK*L-NLDVELTFSYYVILIIAHLLQALVSPFLVC 107
           + GI  G  N  S+H +    +  + K   N+ + L  +     I++   +AL +  L  
Sbjct: 173 INGIYAGDLNDLSMHSSMFGFLAKIEKKYGNITLGLIRALLAREILSPAEKALKAALLAE 232

Query: 106 IKVLSKSNSIAETSLFSSKYPLFAI-ICYAEKKKK 5
            K    SNS+  TS+F+ K  +  I +  A++ KK
Sbjct: 233 PKTAELSNSMKSTSMFAFKEGIETITLSIADELKK 267


>SPCC1494.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 274

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 563 TDLYTDGGQXXXXXXLVNTS*GIEIRWLQKVLSSL 459
           T L TDG +       V TS G+   W +K+L S+
Sbjct: 164 TGLLTDGKELKRRDDEVYTSTGLASAWAEKMLHSI 198


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 17/58 (29%), Positives = 30/58 (51%)
 Frame = +1

Query: 565 ALSVLTNFCNEPELATHPEMLANIPVFLDIVQTSXXXXXXXXLIIISEAYTCLQCIAE 738
           A+S+  N C   + +        IP+  +I+Q+S         I++S+AY+CL+ I E
Sbjct: 522 AISLAANCCKFLDESNASAAEEIIPLLSNILQSSDT-------IVVSKAYSCLETIIE 572


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 659 CTISRNTGMFASISGWVASSGSLQKLVSTDNATDLY 552
           C I++  G + S  G  AS G LQ  +   N TDL+
Sbjct: 543 CEIAQVEGTYESYEGSPASQGILQYDMWNVNPTDLW 578


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,160,583
Number of Sequences: 5004
Number of extensions: 62529
Number of successful extensions: 171
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)