Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00074
         (813 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22322| Best HMM Match : Neurochondrin (HMM E-Value=2.9e-08)         60   3e-09
SB_33016| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.090
SB_34627| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.6  
SB_17996| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.6  
SB_36126| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_53725| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_4770| Best HMM Match : Exo_endo_phos (HMM E-Value=0.031)            28   7.8  

>SB_22322| Best HMM Match : Neurochondrin (HMM E-Value=2.9e-08)
          Length = 561

 Score = 59.7 bits (138), Expect = 3e-09
 Identities = 24/57 (42%), Positives = 42/57 (73%)
 Frame = +2

Query: 338 DVSEPIKKCILILKNARSDTEKFAALFMVTKLVKSKDCNSTAKKALFEAIGFQFLKK 508
           D    ++KCI++LK+ ++D E+FAAL +VT+LV+S   +S  ++ LF A+GF+F+ +
Sbjct: 15  DSGGALQKCIMMLKSVKNDNERFAALLLVTQLVQSDSISSEQRRELFNAVGFKFINR 71


>SB_33016| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 238

 Score = 34.7 bits (76), Expect = 0.090
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
 Frame = +3

Query: 69  VSAILFDLDNTLIQTRKGDTKACNK---*AIIRIT**ENVSSTSRFSYFGREH 218
           V  +LFD DNTL+QT K D +A  K     +  ++  + +++TS FS    EH
Sbjct: 3   VKGLLFDFDNTLVQTNKSDLEALEKVKQWLMETLSEEQALAATSEFSRLLHEH 55


>SB_34627| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1925

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 384 QEATPKNLLPCLW*RNW*KARTAILQRR-KHFLKPSDFNSSRSVDKQQC 527
           +E  PK+    LW  +W +  T   +RR K  LKP+    S S+D  +C
Sbjct: 287 RENPPKSRNRSLWPPSWIRVTTINHERRRKQLLKPTGLAPSNSLDIAKC 335


>SB_17996| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 778

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +2

Query: 563 WHYLYSPTSVMNLNLQPIQKCWQTYQYSLI*YKHQ-IMMTTMITLSLLVKHTPAY 724
           +HY Y P +++ +N  P+     TY +    + HQ I + T+IT+ +L   T  Y
Sbjct: 623 YHYYYQPITIVTINKSPLSP--STYFH----HHHQHITIITIITIKILPSSTSNY 671


>SB_36126| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 71

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 12/21 (57%), Positives = 17/21 (80%)
 Frame = -2

Query: 308 TKRNRAPLSARNRSRIVQQRL 246
           TKRNRAP+SAR   ++ ++RL
Sbjct: 43  TKRNRAPVSARGSRKMTKKRL 63


>SB_53725| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 296

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -2

Query: 650 SRNTGMFASISGWVASSGSLQKLVSTDNATDLYTDGG 540
           +R  G+   + G +     + KLV  +N+T+ Y DGG
Sbjct: 31  ARANGLQGRLDGDIVIDSLILKLVELENSTEAYKDGG 67


>SB_4770| Best HMM Match : Exo_endo_phos (HMM E-Value=0.031)
          Length = 599

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 6/104 (5%)
 Frame = +2

Query: 401 KFAALFMVTKLVKSKDCNSTAKKALFEAIGFQFLKKC*QATV*KMIALRLYINRWHYLYS 580
           KF  +F+   L     CNS  KK        + LK+C  +T   ++  R  + R    Y+
Sbjct: 429 KFLGVFITHDLTWEVHCNSIVKKENRHLYAIRQLKRCGVSTDNIIVVYRSLV-RSTLEYA 487

Query: 581 PTSVMNL------NLQPIQKCWQTYQYSLI*YKHQIMMTTMITL 694
                +L      +L+ +QKC     Y  + YK  +    + TL
Sbjct: 488 SVVFADLPRYLSDSLERVQKCTLAIIYPGLDYKEALTRVNLATL 531


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,118,535
Number of Sequences: 59808
Number of extensions: 450070
Number of successful extensions: 931
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2263654701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)