Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00074
         (813 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC024592-1|AAH24592.1|  729|Homo sapiens neurochondrin protein.        62   2e-09
AC004865-1|AAD05029.1|  730|Homo sapiens unknown protein.              62   2e-09
AB027514-2|BAA77831.1|  712|Homo sapiens neurochondrin-2 protein.      62   2e-09
AB027514-1|BAA77830.1|  729|Homo sapiens neurochondrin-1 protein.      62   2e-09
AB018740-1|BAA85385.2|  712|Homo sapiens neurochondrin-2 protein.      62   2e-09
AB018739-1|BAA85384.2|  729|Homo sapiens neurochondrin-1 protein.      62   2e-09
AB011179-1|BAA25533.1|  731|Homo sapiens KIAA0607 protein protein.     62   2e-09

>BC024592-1|AAH24592.1|  729|Homo sapiens neurochondrin protein.
          Length = 729

 Score = 62.1 bits (144), Expect = 2e-09
 Identities = 27/91 (29%), Positives = 46/91 (50%)
 Frame = +1

Query: 493 SIPQEVLTSNSVEDDCPPSVYKSVALSVLTNFCNEPELATHPEMLANIPVFLDIVQTSXX 672
           + P  +LT+    D CP  V +++ +++L  FC++PELA HP++L  IP+    +     
Sbjct: 83  TFPNRLLTTKEAPDGCPDHVLRALGVALLACFCSDPELAAHPQVLNKIPILSTFLTARGD 142

Query: 673 XXXXXXLIIISEAYTCLQCIAEHEAGQRALL 765
                   +I + Y CL  +A    G R L+
Sbjct: 143 PDDAARRSMIDDTYQCLTAVAGTPRGPRHLI 173



 Score = 48.8 bits (111), Expect = 2e-05
 Identities = 21/63 (33%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
 Frame = +2

Query: 314 CRVLVTMGDVSEP-IKKCILILKNARSDTEKFAALFMVTKLVKSKDCNSTAKKALFEAIG 490
           C   +   +   P +++ +  L+ A++D+E+FAAL +VTK VK+ D ++  ++ +F+A+G
Sbjct: 22  CEPALNQAEGRNPTLERYLGALREAKNDSEQFAALLLVTKAVKAGDIDAKTRRRIFDAVG 81

Query: 491 FQF 499
           F F
Sbjct: 82  FTF 84


>AC004865-1|AAD05029.1|  730|Homo sapiens unknown protein.
          Length = 730

 Score = 62.1 bits (144), Expect = 2e-09
 Identities = 27/91 (29%), Positives = 46/91 (50%)
 Frame = +1

Query: 493 SIPQEVLTSNSVEDDCPPSVYKSVALSVLTNFCNEPELATHPEMLANIPVFLDIVQTSXX 672
           + P  +LT+    D CP  V +++ +++L  FC++PELA HP++L  IP+    +     
Sbjct: 84  TFPNRLLTTKEAPDGCPDHVLRALGVALLACFCSDPELAAHPQVLNKIPILSTFLTARGD 143

Query: 673 XXXXXXLIIISEAYTCLQCIAEHEAGQRALL 765
                   +I + Y CL  +A    G R L+
Sbjct: 144 PDDAARRSMIDDTYQCLTAVAGTPRGPRHLI 174



 Score = 48.8 bits (111), Expect = 2e-05
 Identities = 21/63 (33%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
 Frame = +2

Query: 314 CRVLVTMGDVSEP-IKKCILILKNARSDTEKFAALFMVTKLVKSKDCNSTAKKALFEAIG 490
           C   +   +   P +++ +  L+ A++D+E+FAAL +VTK VK+ D ++  ++ +F+A+G
Sbjct: 23  CEPALNQAEGRNPTLERYLGALREAKNDSEQFAALLLVTKAVKAGDIDAKTRRRIFDAVG 82

Query: 491 FQF 499
           F F
Sbjct: 83  FTF 85


>AB027514-2|BAA77831.1|  712|Homo sapiens neurochondrin-2 protein.
          Length = 712

 Score = 62.1 bits (144), Expect = 2e-09
 Identities = 27/91 (29%), Positives = 46/91 (50%)
 Frame = +1

Query: 493 SIPQEVLTSNSVEDDCPPSVYKSVALSVLTNFCNEPELATHPEMLANIPVFLDIVQTSXX 672
           + P  +LT+    D CP  V +++ +++L  FC++PELA HP++L  IP+    +     
Sbjct: 66  TFPNRLLTTKEAPDGCPDHVLRALGVALLACFCSDPELAAHPQVLNKIPILSTFLTARGD 125

Query: 673 XXXXXXLIIISEAYTCLQCIAEHEAGQRALL 765
                   +I + Y CL  +A    G R L+
Sbjct: 126 PDDAARRSMIDDTYQCLTAVAGTPRGPRHLI 156



 Score = 48.8 bits (111), Expect = 2e-05
 Identities = 21/63 (33%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
 Frame = +2

Query: 314 CRVLVTMGDVSEP-IKKCILILKNARSDTEKFAALFMVTKLVKSKDCNSTAKKALFEAIG 490
           C   +   +   P +++ +  L+ A++D+E+FAAL +VTK VK+ D ++  ++ +F+A+G
Sbjct: 5   CEPALNQAEGRNPTLERYLGALREAKNDSEQFAALLLVTKAVKAGDIDAKTRRRIFDAVG 64

Query: 491 FQF 499
           F F
Sbjct: 65  FTF 67


>AB027514-1|BAA77830.1|  729|Homo sapiens neurochondrin-1 protein.
          Length = 729

 Score = 62.1 bits (144), Expect = 2e-09
 Identities = 27/91 (29%), Positives = 46/91 (50%)
 Frame = +1

Query: 493 SIPQEVLTSNSVEDDCPPSVYKSVALSVLTNFCNEPELATHPEMLANIPVFLDIVQTSXX 672
           + P  +LT+    D CP  V +++ +++L  FC++PELA HP++L  IP+    +     
Sbjct: 83  TFPNRLLTTKEAPDGCPDHVLRALGVALLACFCSDPELAAHPQVLNKIPILSTFLTARGD 142

Query: 673 XXXXXXLIIISEAYTCLQCIAEHEAGQRALL 765
                   +I + Y CL  +A    G R L+
Sbjct: 143 PDDAARRSMIDDTYQCLTAVAGTPRGPRHLI 173



 Score = 48.8 bits (111), Expect = 2e-05
 Identities = 21/63 (33%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
 Frame = +2

Query: 314 CRVLVTMGDVSEP-IKKCILILKNARSDTEKFAALFMVTKLVKSKDCNSTAKKALFEAIG 490
           C   +   +   P +++ +  L+ A++D+E+FAAL +VTK VK+ D ++  ++ +F+A+G
Sbjct: 22  CEPALNQAEGRNPTLERYLGALREAKNDSEQFAALLLVTKAVKAGDIDAKTRRRIFDAVG 81

Query: 491 FQF 499
           F F
Sbjct: 82  FTF 84


>AB018740-1|BAA85385.2|  712|Homo sapiens neurochondrin-2 protein.
          Length = 712

 Score = 62.1 bits (144), Expect = 2e-09
 Identities = 27/91 (29%), Positives = 46/91 (50%)
 Frame = +1

Query: 493 SIPQEVLTSNSVEDDCPPSVYKSVALSVLTNFCNEPELATHPEMLANIPVFLDIVQTSXX 672
           + P  +LT+    D CP  V +++ +++L  FC++PELA HP++L  IP+    +     
Sbjct: 66  TFPNRLLTTKEAPDGCPDHVLRALGVALLACFCSDPELAAHPQVLNKIPILSTFLTARGD 125

Query: 673 XXXXXXLIIISEAYTCLQCIAEHEAGQRALL 765
                   +I + Y CL  +A    G R L+
Sbjct: 126 PDDAARRSMIDDTYQCLTAVAGTPRGPRHLI 156



 Score = 48.8 bits (111), Expect = 2e-05
 Identities = 21/63 (33%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
 Frame = +2

Query: 314 CRVLVTMGDVSEP-IKKCILILKNARSDTEKFAALFMVTKLVKSKDCNSTAKKALFEAIG 490
           C   +   +   P +++ +  L+ A++D+E+FAAL +VTK VK+ D ++  ++ +F+A+G
Sbjct: 5   CEPALNQAEGRNPTLERYLGALREAKNDSEQFAALLLVTKAVKAGDIDAKTRRRIFDAVG 64

Query: 491 FQF 499
           F F
Sbjct: 65  FTF 67


>AB018739-1|BAA85384.2|  729|Homo sapiens neurochondrin-1 protein.
          Length = 729

 Score = 62.1 bits (144), Expect = 2e-09
 Identities = 27/91 (29%), Positives = 46/91 (50%)
 Frame = +1

Query: 493 SIPQEVLTSNSVEDDCPPSVYKSVALSVLTNFCNEPELATHPEMLANIPVFLDIVQTSXX 672
           + P  +LT+    D CP  V +++ +++L  FC++PELA HP++L  IP+    +     
Sbjct: 83  TFPNRLLTTKEAPDGCPDHVLRALGVALLACFCSDPELAAHPQVLNKIPILSTFLTARGD 142

Query: 673 XXXXXXLIIISEAYTCLQCIAEHEAGQRALL 765
                   +I + Y CL  +A    G R L+
Sbjct: 143 PDDAARRSMIDDTYQCLTAVAGTPRGPRHLI 173



 Score = 48.8 bits (111), Expect = 2e-05
 Identities = 21/63 (33%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
 Frame = +2

Query: 314 CRVLVTMGDVSEP-IKKCILILKNARSDTEKFAALFMVTKLVKSKDCNSTAKKALFEAIG 490
           C   +   +   P +++ +  L+ A++D+E+FAAL +VTK VK+ D ++  ++ +F+A+G
Sbjct: 22  CEPALNQAEGRNPTLERYLGALREAKNDSEQFAALLLVTKAVKAGDIDAKTRRRIFDAVG 81

Query: 491 FQF 499
           F F
Sbjct: 82  FTF 84


>AB011179-1|BAA25533.1|  731|Homo sapiens KIAA0607 protein protein.
          Length = 731

 Score = 62.1 bits (144), Expect = 2e-09
 Identities = 27/91 (29%), Positives = 46/91 (50%)
 Frame = +1

Query: 493 SIPQEVLTSNSVEDDCPPSVYKSVALSVLTNFCNEPELATHPEMLANIPVFLDIVQTSXX 672
           + P  +LT+    D CP  V +++ +++L  FC++PELA HP++L  IP+    +     
Sbjct: 85  TFPNRLLTTKEAPDGCPDHVLRALGVALLACFCSDPELAAHPQVLNKIPILSTFLTARGD 144

Query: 673 XXXXXXLIIISEAYTCLQCIAEHEAGQRALL 765
                   +I + Y CL  +A    G R L+
Sbjct: 145 PDDAARRSMIDDTYQCLTAVAGTPRGPRHLI 175



 Score = 48.8 bits (111), Expect = 2e-05
 Identities = 21/63 (33%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
 Frame = +2

Query: 314 CRVLVTMGDVSEP-IKKCILILKNARSDTEKFAALFMVTKLVKSKDCNSTAKKALFEAIG 490
           C   +   +   P +++ +  L+ A++D+E+FAAL +VTK VK+ D ++  ++ +F+A+G
Sbjct: 24  CEPALNQAEGRNPTLERYLGALREAKNDSEQFAALLLVTKAVKAGDIDAKTRRRIFDAVG 83

Query: 491 FQF 499
           F F
Sbjct: 84  FTF 86


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,920,169
Number of Sequences: 237096
Number of extensions: 2141020
Number of successful extensions: 3967
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3967
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10092110758
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)