Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00074
         (813 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023842-7|CAA19518.3|  345|Caenorhabditis elegans Hypothetical ...    29   5.2  
AF022971-2|AAG23980.1|  327|Caenorhabditis elegans Seven tm rece...    29   5.2  
AB108783-1|BAC75705.1|  345|Caenorhabditis elegans SDF-9 protein...    29   5.2  

>AL023842-7|CAA19518.3|  345|Caenorhabditis elegans Hypothetical
           protein Y44A6D.4 protein.
          Length = 345

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = -2

Query: 344 IHHPLSLTHDTLTKRNRAPLSARNRSRIVQQRLDPHHVYN*SVFSSKIAKSG 189
           I H L      L++R  A L A NR+R+V  ++ P H YN  +  S + + G
Sbjct: 10  IVHKLDDNQPLLSERVTARLEAVNRNRVV--KIVPQHRYNVRLTPSMLNRDG 59


>AF022971-2|AAG23980.1|  327|Caenorhabditis elegans Seven tm
           receptor protein 46 protein.
          Length = 327

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = -1

Query: 468 FFAVELQSLLFTSFVTINRAANFSVSLLAFFKMSMHFLIGSDTSPIVT 325
           FF++  Q+ LF   +++   A F + +LAFF +   F   S  +PI T
Sbjct: 75  FFSLNTQNSLFLVQISVAVYAGFYLFILAFFVVQFVFRYVSLVNPIST 122


>AB108783-1|BAC75705.1|  345|Caenorhabditis elegans SDF-9 protein
           protein.
          Length = 345

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = -2

Query: 344 IHHPLSLTHDTLTKRNRAPLSARNRSRIVQQRLDPHHVYN*SVFSSKIAKSG 189
           I H L      L++R  A L A NR+R+V  ++ P H YN  +  S + + G
Sbjct: 10  IVHKLDDNQPLLSERVTARLEAVNRNRVV--KIVPQHRYNVRLTPSMLNRDG 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,470,348
Number of Sequences: 27780
Number of extensions: 351135
Number of successful extensions: 819
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)