Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00074
         (813 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    24   1.5  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   4.4  
AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding prote...    23   4.4  
AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-bind...    23   4.4  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 435 TSFVTINRAANFSVSLLAFFKMSMHFLIGSD 343
           TSFV  NRA  F +   +  K+S   ++G D
Sbjct: 354 TSFVLNNRAGRFLILTESDTKLSSQGILGED 384


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
 Frame = -3

Query: 655 LYQGILVCLPAFLDGLQV---QVHYRSW*VQIMPPIYIQTEGNHLLHCCLSTLLEELKSD 485
           LY G+ +CL  F   L V    +H+R      +P I      + L    L    EE +S+
Sbjct: 277 LYYGVSICLVTFASALAVVTLNLHHRGVRGTRVPGIVRSLVLDKLARIVLLNFQEERRSE 336


>AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding protein
           ASP2 protein.
          Length = 142

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 60  NSDVSAILFDLDNTLIQTRKGDTKACN 140
           N+D   ++  + N  I+  KG+T  CN
Sbjct: 101 NADDIQLVKGIANECIENAKGETDECN 127


>AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-binding
           protein ASP2 protein.
          Length = 142

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 60  NSDVSAILFDLDNTLIQTRKGDTKACN 140
           N+D   ++  + N  I+  KG+T  CN
Sbjct: 101 NADDIQLVKGIANECIENAKGETDECN 127


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,875
Number of Sequences: 438
Number of extensions: 3963
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)