Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00074
         (813 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g32050.1 68417.m04562 neurochondrin family protein contains P...    39   0.005
At1g02990.2 68414.m00269 expressed protein similar to mature-par...    30   1.6  
At1g02990.1 68414.m00270 expressed protein similar to mature-par...    30   1.6  

>At4g32050.1 68417.m04562 neurochondrin family protein contains Pfam
           PF05536: Neurochondrin
          Length = 618

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 14/36 (38%), Positives = 26/36 (72%)
 Frame = +1

Query: 550 VYKSVALSVLTNFCNEPELATHPEMLANIPVFLDIV 657
           VY  ++++VL  FC  PE+A+  EM++ IP+ L+++
Sbjct: 78  VYLQISITVLAAFCRVPEIASSEEMVSRIPLILEVM 113


>At1g02990.2 68414.m00269 expressed protein similar to
           mature-parasite-infected erythrocyte surface antigen
           (GI:160409) {Plasmodium falciparum}
          Length = 1238

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +3

Query: 468 KHFLKPSDFNSSRSVDKQQCRR 533
           KH +KPSD N  R   KQ  RR
Sbjct: 529 KHLIKPSDLNEDRHTTKQSVRR 550


>At1g02990.1 68414.m00270 expressed protein similar to
           mature-parasite-infected erythrocyte surface antigen
           (GI:160409) {Plasmodium falciparum}
          Length = 1069

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +3

Query: 468 KHFLKPSDFNSSRSVDKQQCRR 533
           KH +KPSD N  R   KQ  RR
Sbjct: 529 KHLIKPSDLNEDRHTTKQSVRR 550


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,107,282
Number of Sequences: 28952
Number of extensions: 314096
Number of successful extensions: 702
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1853336000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)