Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00072
         (511 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54531| Best HMM Match : Ribosomal_S19e (HMM E-Value=5e-30)          62   3e-10
SB_9755| Best HMM Match : Sushi (HMM E-Value=0)                        30   1.3  
SB_8022| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.3  
SB_9024| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.3  
SB_38543| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.9  
SB_31846| Best HMM Match : Trypsin (HMM E-Value=0)                     28   5.1  
SB_44212| Best HMM Match : DUF1071 (HMM E-Value=5.9)                   27   9.0  
SB_16945| Best HMM Match : SecA_SW (HMM E-Value=9.3e-39)               27   9.0  
SB_29339| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  

>SB_54531| Best HMM Match : Ribosomal_S19e (HMM E-Value=5e-30)
          Length = 92

 Score = 61.7 bits (143), Expect = 3e-10
 Identities = 28/52 (53%), Positives = 37/52 (71%)
 Frame = +2

Query: 251 QSNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 406
           ++ G  PSHF   S S+AR  L+ LE +KLVEK   GGR +T+QG+RD+DRI
Sbjct: 37  KNRGSAPSHFEVGSASVARSVLKGLEQIKLVEKASTGGRNITSQGQRDMDRI 88



 Score = 58.8 bits (136), Expect = 2e-09
 Identities = 21/32 (65%), Positives = 29/32 (90%)
 Frame = +3

Query: 78  TGKVKVPEHMDLVKTARFKELAPYDPDWFYVR 173
           +G +K+P+ +DLVKT +FKELAPYDPDW+Y+R
Sbjct: 2   SGNLKIPDWVDLVKTGKFKELAPYDPDWYYIR 33


>SB_9755| Best HMM Match : Sushi (HMM E-Value=0)
          Length = 1351

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +1

Query: 241 LVGAK*WSYTFTFLQVIRQYCTQGFAIVGGIEAC*ESSGRWS 366
           L G K  S T TF   ++  C +GF ++G      +S+G+WS
Sbjct: 11  LNGTKTGSLT-TFPNTVKFMCDEGFNLIGSRNRTCQSNGKWS 51


>SB_8022| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 386

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
 Frame = +3

Query: 18  TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMD-LVKTARFKELAPYDPDWFYVRCAAILRH 194
           TV  V   K  KT          ++VP  ++ L  T R  E+  +   W  V+C      
Sbjct: 221 TVNKVTGRKYTKTFVIMSGSNRPMRVPHSLEPLTLTNRVAEVT-FCRSWNAVKCTKYCAL 279

Query: 195 IYIRSPVGVKTVTKIFG 245
           IY+ S +  + V K+ G
Sbjct: 280 IYLHSRLDTQPVNKVIG 296


>SB_9024| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 455

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +1

Query: 241 LVGAK*WSYTFTFLQVIRQYCTQGFAIVGGIEAC*ESSGRWS 366
           L G K  S T TF   ++  C +GF ++G      +S+G+WS
Sbjct: 276 LNGTKTGSLT-TFPNTVKFMCDEGFNLIGSRNRTCQSNGKWS 316



 Score = 28.3 bits (60), Expect = 3.9
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +1

Query: 247 GAK*WSYTFTFLQVIRQYCTQGFAIVGG-IEAC*ESSGRWS 366
           G K  S T TF   +   C +GF ++G  + +C +SSG+WS
Sbjct: 104 GTKTGSLT-TFPNKVTFSCDEGFILIGSPLRSC-QSSGKWS 142


>SB_38543| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 346

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +2

Query: 29  C*TRQDC*NCRCSLKKNGQSQGT*AHGSCKDSSLQRAGSV 148
           C   QDC + RC  +KNG  + T A G CK S    + ++
Sbjct: 301 CNCMQDCSSSRCFWRKNG-IECTPACGQCKGSDCTNSPAI 339


>SB_31846| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 454

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 215 WSQDCHQDLWWAQSNGVTPSHF 280
           ++QD H    W Q NG TPS +
Sbjct: 34  YTQDLHDQFDWTQINGSTPSSY 55


>SB_44212| Best HMM Match : DUF1071 (HMM E-Value=5.9)
          Length = 274

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +3

Query: 195 IYIRSPVGVKTVTKIFGGRKVMELHLHISAGHQAVLHARLCNRW 326
           +Y+ + +G  +  K+FGG  V  L+ H +   +A++H  LC +W
Sbjct: 170 LYV-ADLGEISYGKLFGG-VVSRLYFHYAG--EALIHDTLCTKW 209


>SB_16945| Best HMM Match : SecA_SW (HMM E-Value=9.3e-39)
          Length = 540

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 192 HIYIRSPVGVKTVTKIFGGRKVMELHLHISA 284
           H+ I +  G K  T +FGG +V + HL I +
Sbjct: 22  HMKIYTKTGDKGTTALFGGTRVPKHHLRIES 52


>SB_29339| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1048

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 274  TFLQVIRQYCTQGFAIVGGIEAC*ESSGRWSHSHHT 381
            T+   I   C +G+A++G      +++G WS S+ T
Sbjct: 913  TYSSTINITCDEGYALIGPESRVCQANGTWSGSNVT 948


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,694,458
Number of Sequences: 59808
Number of extensions: 295167
Number of successful extensions: 707
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)