Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00071
         (715 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    25   0.81 
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    22   5.7  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    21   7.5  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   7.5  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   7.5  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   7.5  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    21   9.9  
EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic hor...    21   9.9  
DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic hor...    21   9.9  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   9.9  

>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 24.6 bits (51), Expect = 0.81
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -2

Query: 318 YLLSLAVALTDERKLFVHIVARRKPLTLSSLVTFPSPQ*ST 196
           YL SL++A     +LF H  A  +P+ L      PSP+ S+
Sbjct: 46  YLFSLSLA--QNNQLFTHHKAPIRPVALPPKREIPSPKRSS 84


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +3

Query: 654 VTGGDYINAVKTVRTFDDNQ 713
           + G D++N  + V  FD+N+
Sbjct: 179 ILGADWLNEQRAVIDFDNNE 198


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -1

Query: 382 RRL*CNWKCRCRPQTRRESCWVFAFPCCGP 293
           + L CN K  C+ ++   SC V   P   P
Sbjct: 131 KELFCNGKPDCKDESDENSCTVETDPNRAP 160


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 6/15 (40%), Positives = 8/15 (53%)
 Frame = -1

Query: 133 WGVWIQQVLICVVVW 89
           W  W+  + ICV  W
Sbjct: 475 WHTWMPVMRICVSAW 489


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
 Frame = +2

Query: 305 RESKYPTGFPSCLWTTATL-PVTSETAALKLLPSARGRSVSGALQTSPGLSTPPKDSSLP 481
           R   YP  FP+  +    L P  S+ AA    PS    S     ++    + P   SSLP
Sbjct: 161 RPPMYP--FPAGQYPYPILSPEMSQVAASWHTPSMYPLSPGAGFRSPYPSALPISTSSLP 218

Query: 482 TDILKILTT 508
           +D  +   T
Sbjct: 219 SDFYRFSPT 227


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
 Frame = +2

Query: 305 RESKYPTGFPSCLWTTATL-PVTSETAALKLLPSARGRSVSGALQTSPGLSTPPKDSSLP 481
           R   YP  FP+  +    L P  S+ AA    PS    S     ++    + P   SSLP
Sbjct: 53  RPPMYP--FPAGQYPYPILSPEMSQVAASWHTPSMYPLSPGAGFRSPYPSALPISTSSLP 110

Query: 482 TDILKILTT 508
           +D  +   T
Sbjct: 111 SDFYRFSPT 119


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -1

Query: 382 RRL*CNWKCRCRPQTRRESCWVFAFP 305
           + L CN K  C+ ++   SC V   P
Sbjct: 124 KELFCNGKPDCKDESDENSCTVETDP 149


>EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +3

Query: 57  RQRKNGKPPLSQTTTQMRTCCIHTP 131
           R R+ G+    +  T   T CI TP
Sbjct: 337 RARRTGRKVSPRVNTIKHTSCIPTP 361


>DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +3

Query: 57  RQRKNGKPPLSQTTTQMRTCCIHTP 131
           R R+ G+    +  T   T CI TP
Sbjct: 337 RARRTGRKVSPRVNTIKHTSCIPTP 361


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = -2

Query: 369 VTGSVAVVHRH 337
           VTG++ ++HRH
Sbjct: 3   VTGNLGIMHRH 13


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,357
Number of Sequences: 336
Number of extensions: 4024
Number of successful extensions: 14
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18947110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)