Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00071
         (715 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo...    29   0.66 
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      29   0.66 
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    28   1.2  
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi...    27   3.5  
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    27   3.5  
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr...    26   4.7  
SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch...    26   6.1  
SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa...    25   8.1  

>SPAC25H1.06 |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -1

Query: 253 TKASYPVKFSHFSFSPVIDVVYQP-STNRYL 164
           T+   PVK  H+  SPV DV Y P  TN Y+
Sbjct: 219 TRCLTPVKDFHYDDSPVNDVEYHPHHTNLYI 249


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +2

Query: 380 AALKLLPSARGRSVSGALQTSPGLSTPPKDSSLPTDILKILTTSKS 517
           A  + L S+   S+  +  TSP L    KD+S  +DILK+   +KS
Sbjct: 215 ARFQTLNSSDSASIYSSPYTSPTLEFSKKDASARSDILKMHRRTKS 260


>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
 Frame = -3

Query: 224 SLFLLPSNRRGVPALYQSVSSRGGTYRSRVLGSMDTTGPHLCGS----LAQRRLPIFPLT 57
           SL ++P N  GV  LY  +    G Y   V+   D T   L  +    L  R + I+P+T
Sbjct: 667 SLCIIPMNVNGVSTLYLHIGLMNGVYLRTVI---DVTSGQLLDTRTRFLGPRAVKIYPIT 723

Query: 56  V 54
           +
Sbjct: 724 M 724


>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 606

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 617 PTQGQSTITCTIGYGRRLHQRGEDC 691
           PT   + +T  IG G RLH+   DC
Sbjct: 342 PTSSPNLLTQMIGRGLRLHEGKRDC 366


>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 17/61 (27%), Positives = 27/61 (44%)
 Frame = +2

Query: 329 FPSCLWTTATLPVTSETAALKLLPSARGRSVSGALQTSPGLSTPPKDSSLPTDILKILTT 508
           F + L+    +  T E A     PS+       A    P +S+P K  S  T +LK++ +
Sbjct: 307 FFNLLYEKFVIGKTKEPAKPVPQPSSNEPPAPSAENKQPSVSSPEKKESPATHLLKVIGS 366

Query: 509 S 511
           S
Sbjct: 367 S 367


>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 19/70 (27%), Positives = 34/70 (48%)
 Frame = -2

Query: 438 VCSAPLTDRPRADGNSFNAAVSDVTGSVAVVHRHDGNPVGYLLSLAVALTDERKLFVHIV 259
           V  +P TD PR      +++V++     +V   +D N +G  L+      +ER++    +
Sbjct: 396 VAESPRTDTPREINGLVDSSVTNGNEKFSVEIMNDSNKIG--LNPKSFTDEEREILT--L 451

Query: 258 ARRKPLTLSS 229
            R  P+ LSS
Sbjct: 452 FRNPPMRLSS 461


>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 587

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -2

Query: 444 GDVCSAPLTDRPRADGNSFNAAVSDVTGSVAVVHRH-DGNPVGYLLS 307
           GD+ S PL D P  D  +      +  G++ + +   D N + Y+L+
Sbjct: 258 GDMISVPLQDSPNPDFPTVKFPNPEEEGALDLAYEQADANGISYVLA 304


>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 589

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 25/91 (27%), Positives = 32/91 (35%)
 Frame = +1

Query: 433 ADVARIVNASEGLVVAYGYSENSDDIKISSVTW*KGLILWSRVRTARRLEDPDGIQHKMV 612
           AD+    +  E L +AYGY          SVT+ K   +       R      G    M 
Sbjct: 345 ADILHQCDIMEDLGIAYGYDNLKHTYPAHSVTFGKPFEVNRLADIIRNEVAYAGWSEVMP 404

Query: 613 FADARSINDHLYNWLRAATTSTR*RLCAPST 705
           F      +D  Y WLR    S   +L  P T
Sbjct: 405 F--ILCSHDENYAWLRKTDDSKAVQLANPKT 433


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,996,303
Number of Sequences: 5004
Number of extensions: 65514
Number of successful extensions: 211
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)