Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00071
         (715 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U46674-5|AAA85757.1|  708|Caenorhabditis elegans Hypothetical pr...    33   0.27 
AL032623-5|CAA21512.1|  533|Caenorhabditis elegans Hypothetical ...    32   0.47 
AF077529-2|AAC26254.1|  292|Caenorhabditis elegans Hypothetical ...    29   4.4  
Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>U46674-5|AAA85757.1|  708|Caenorhabditis elegans Hypothetical
           protein T26A8.1 protein.
          Length = 708

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
 Frame = +2

Query: 284 SSVRATARESKYPTGFPSCLWTTATLP-VTSET-AALKLLPSARGRSVSGALQTSPGLST 457
           SS  +T   +   T  PS    T T+P  TSE  A + +         +G L TS  + T
Sbjct: 339 SSTTSTTTTTTTTTETPSTTVITTTIPSTTSEPEATIDVKTRDSKEDTNGVLPTSSAIET 398

Query: 458 PPKDSSLPTDIL 493
           PP   + P D L
Sbjct: 399 PPYPENCPEDSL 410


>AL032623-5|CAA21512.1|  533|Caenorhabditis elegans Hypothetical
           protein Y43F8B.4 protein.
          Length = 533

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 13/55 (23%), Positives = 28/55 (50%)
 Frame = +1

Query: 475 VAYGYSENSDDIKISSVTW*KGLILWSRVRTARRLEDPDGIQHKMVFADARSIND 639
           V + Y +N   +K+  V W  GL+++  + T +++ D   +   + F +   +ND
Sbjct: 301 VCFEYLQNFQIVKVEVVAWRPGLVIYRDLFTGKQVRDHLELMEHLKFEEQLVVND 355


>AF077529-2|AAC26254.1|  292|Caenorhabditis elegans Hypothetical
           protein C09E8.2a protein.
          Length = 292

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/62 (25%), Positives = 29/62 (46%)
 Frame = -2

Query: 606 FVLNSVWVFKSAGSSYPAP*YKPFLPSHARDFDVVRIFRISVGNDESFGGVDNPGDVCSA 427
           F+ +  + F    + +  P ++ FL          ++ R  +G D SFGG +NP +V   
Sbjct: 6   FIFSLTFTFSRISADF-TPHFRKFLHDSYGIAITGQLERTDLGMDASFGGKENPTEVPQN 64

Query: 426 PL 421
           P+
Sbjct: 65  PV 66


>Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical protein
            C29A12.4 protein.
          Length = 1560

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
 Frame = -2

Query: 453  DNPGDVCSAPLTDRPRADGNSF----NAAVSDVTGSVAVVHRH-DGNPV 322
            D   D C+ PL  +P  +GN +     A +++  G+ A + R+ +GN V
Sbjct: 1501 DRSNDSCTQPLLAKPHINGNGYEPLKGAVIANGNGATATMMRNGNGNGV 1549


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,833,256
Number of Sequences: 27780
Number of extensions: 378391
Number of successful extensions: 1217
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1217
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)