Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00071
         (715 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    24   1.6  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              24   1.6  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   5.0  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   5.0  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   8.8  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   8.8  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   8.8  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 17/66 (25%), Positives = 27/66 (40%)
 Frame = +2

Query: 50  KTPSEEKWEAASEPDYHTNEDLLYPYSPIPYFGMYHLVKIPIGRGLVHHVDYWGEGKVTK 229
           K     K    S+ + +  ED++ P      +  +  ++IPI R L        EG  T 
Sbjct: 146 KNAGNNKITMKSKKEQNAEEDIVDPVEENETYDEFDTIRIPIVRSLSKSPPN-DEGIETD 204

Query: 230 LDRVRG 247
            DR +G
Sbjct: 205 SDRRKG 210


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 220 FSFSPVIDVVYQPSTNRYLHEVVHTEV 140
           FSF     +VY+PS  R  HE+  T+V
Sbjct: 507 FSFHQWGILVYEPSACRPRHEIRSTDV 533


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 569 PADLKTQTEFSTKWSLPT 622
           P + KT  EF+  W++PT
Sbjct: 34  PDNNKTVREFNVYWNVPT 51


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +2

Query: 326 GFPSCLWTTATLPVTSETAAL 388
           G    LWT A+    SET AL
Sbjct: 294 GASDILWTQASAKAISETGAL 314


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 13/40 (32%), Positives = 16/40 (40%)
 Frame = -1

Query: 181 STNRYLHEVVHTEVGYWGVWIQQVLICVVVWLRGGFPFFL 62
           S +RY+H       G W      V    VVWL  G   F+
Sbjct: 120 SLDRYIHIKDPLRYGRWVTRRIAVAGIAVVWLLAGLISFV 159


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +1

Query: 253 SSYNVNEQFALVSKGHSKGKQIP 321
           S+ N+++  A V + + +GK+IP
Sbjct: 238 SNINISQVIACVGQQNVEGKRIP 260


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 403 STGPISKRCAADVARIVNASEGLVVAYGYSENSD 504
           +T PI+ RC  +  +I +     VVA G + N D
Sbjct: 365 ATLPITFRCLEENNKIDSRVTRFVVAVGATVNMD 398


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,059
Number of Sequences: 438
Number of extensions: 4372
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)