Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00070
         (804 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    28   1.8  
SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces ...    27   2.4  
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi...    27   2.4  
SPBC1539.03c |||argininosuccinate lyase|Schizosaccharomyces pomb...    25   9.5  

>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1588

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -1

Query: 630  NFHLHLVPVESRARSPDAAVRDTM 559
            NFH  LV + SRAR PD   R T+
Sbjct: 1056 NFHTQLVSLISRARDPDYYSRPTI 1079


>SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 461

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 12/52 (23%), Positives = 27/52 (51%)
 Frame = -2

Query: 485 IVEN*VCGSFIICHLILFPQDSFVLFFSAHFFIISKLPGHFTGNSILPAHSN 330
           ++E       ++ H+  F +D  +++ S+ F  ++    + TG+SI+P   N
Sbjct: 240 VIEFMFWAGMVMLHISRFAED-LIIYSSSEFGFVTLSDAYSTGSSIMPQKKN 290


>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 865

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = +1

Query: 37  FVKVKVTYLVKMSGKNN-KAFTKEEELLLQDFSRNVSTKSSALFYGNAFIVSAI 195
           F++VK+   + + G+NN K + K  +LL Q  +   S++++    GNA +  A+
Sbjct: 272 FLQVKILQFLSILGQNNPKIYDKMSDLLAQVCTNTDSSRNA----GNAILYQAV 321


>SPBC1539.03c |||argininosuccinate lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 460

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/52 (21%), Positives = 27/52 (51%)
 Frame = -2

Query: 485 IVEN*VCGSFIICHLILFPQDSFVLFFSAHFFIISKLPGHFTGNSILPAHSN 330
           ++E     S ++ H+    +D  +++ ++ F  ++    + TG+SI+P   N
Sbjct: 239 VIEFMFWASMVMTHISRLAED-LIIYSTSEFNFVTLSDAYSTGSSIMPQKKN 289


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,236,052
Number of Sequences: 5004
Number of extensions: 65251
Number of successful extensions: 155
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)