Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00070
         (804 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0037 - 256891-256998,257347-257502,257753-257824,258737-25...    29   4.3  

>05_01_0037 -
           256891-256998,257347-257502,257753-257824,258737-258784,
           259071-259143,259237-259250
          Length = 156

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = -2

Query: 266 RY*DNQIIAVLISNECTLQNNQIGIAETIKAFP*KRADDFVDTFRLKSCN 117
           RY  + +  +L+ N+C L ++++   E  KAF       F++T   +S N
Sbjct: 92  RYASDSVCKLLVGNKCDLVDSKVVDTEEAKAFAESLGISFLETSAKESIN 141


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,017,684
Number of Sequences: 37544
Number of extensions: 395047
Number of successful extensions: 875
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)