Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00070
         (804 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)               83   3e-16
SB_36663| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.5  
SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13)                   29   3.3  
SB_55031| Best HMM Match : GRP (HMM E-Value=5.3)                       29   4.4  
SB_29755| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_47092| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_54138| Best HMM Match : rve (HMM E-Value=6.8e-24)                   28   7.7  

>SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1789

 Score = 82.6 bits (195), Expect = 3e-16
 Identities = 35/50 (70%), Positives = 43/50 (86%)
 Frame = +1

Query: 82  NNKAFTKEEELLLQDFSRNVSTKSSALFYGNAFIVSAIPIWLFWRVHSLE 231
           N K  +KE+ELLLQ+FSR+VSTKSS LFY NA IVSAIP+WLFWR+H ++
Sbjct: 3   NGKKLSKEDELLLQNFSRSVSTKSSILFYANALIVSAIPLWLFWRIHQMD 52



 Score = 55.2 bits (127), Expect = 6e-08
 Identities = 25/58 (43%), Positives = 37/58 (63%)
 Frame = +3

Query: 249 LVILVTAASTWLLALAYRNTKFQLKHXXXXXXXXXXXXXMSRKLADDKKMSRKEKDER 422
           L  ++T  STWL+A AY+N KFQLKH             ++++L  +KK++R+EKDER
Sbjct: 59  LFAVMTLVSTWLVAFAYKNVKFQLKHKIAQRRDAAITKEVNQELDPNKKLTRQEKDER 116


>SB_36663| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 205

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 15/67 (22%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
 Frame = -2

Query: 224 ECTLQNNQIGIAETIKAFP*KRADDFVDTFRLKSCNNNSSSFVKALLF-FPDIFTK*VTL 48
           E  +  +++G+A ++ A   +RAD+ +++  ++     S S VK +L   P+   K ++ 
Sbjct: 3   ESIVDASRLGVATSLSAETPRRADELIESANMERNKGKSRSQVKEMLLKVPEFIKKSISS 62

Query: 47  TFTNTNK 27
           T ++ ++
Sbjct: 63  TISDEDE 69


>SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13)
          Length = 943

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +1

Query: 430 GKRMRWQIMKLPHTQFSTITHFS*LLY 510
           GK+MR  + K P T F T+T  S LLY
Sbjct: 757 GKQMRGVMSKKPQTVFDTLTEVSRLLY 783


>SB_55031| Best HMM Match : GRP (HMM E-Value=5.3)
          Length = 487

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 26/94 (27%), Positives = 37/94 (39%)
 Frame = +3

Query: 21  AAFICVCKS*SNLFSKNVWKEQQSFYKRRRVIVARF*PECVHKIVCSLLRERFYCFSNSN 200
           AAF+C   +  NLF   + K  QS     + I+ R  P C+        R+R        
Sbjct: 81  AAFLCHMSTQRNLFKPVIVKSNQSHKDTAKHILLRLHPACIRGFCLRHHRQR---LPRQR 137

Query: 201 LVVLEGTFIGNKHRNYLVILVTAASTWLLALAYR 302
              +  T   N H+   V+L T     LL  +YR
Sbjct: 138 CFGIFTTDYSNAHKR--VLLKTNTFQKLLLQSYR 169


>SB_29755| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 585

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -3

Query: 628 LPSSLGSCGE*S--KKSRCSRERHNVINCRCECTQ 530
           LPS   +CG  +  ++SRCS  R +V  CR  C +
Sbjct: 470 LPSKRSTCGTCAPRRQSRCSCVRSSVAGCRTACVR 504


>SB_47092| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 619

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 600 SPQEPSEDGSLMRHVIQTVLILNILDILWQL 692
           SPQ       L  HVIQT +ILN +D L ++
Sbjct: 208 SPQTIRRSAELPHHVIQTCIILNDIDGLLEI 238


>SB_54138| Best HMM Match : rve (HMM E-Value=6.8e-24)
          Length = 2160

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/50 (24%), Positives = 26/50 (52%)
 Frame = -2

Query: 320  QLELSVTVGKSQQPGASCRY*DNQIIAVLISNECTLQNNQIGIAETIKAF 171
            ++E+ + VG+    G   RY   Q+   +  N C + + +I +A+++  F
Sbjct: 1032 EIEVEIGVGEEVPQGTEARYKHFQLSRSVYGNSCQIASWEIKMADSLSDF 1081


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,821,266
Number of Sequences: 59808
Number of extensions: 486013
Number of successful extensions: 982
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)