Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00070
         (804 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   3.3  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   3.3  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    23   4.4  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   4.4  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   4.4  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    23   4.4  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   5.8  

>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -3

Query: 790 NSHKLTYSYESKNFLTNKYN 731
           N++   Y+Y + N+  N YN
Sbjct: 325 NNNNYKYNYNNNNYNNNNYN 344


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 6/24 (25%), Positives = 16/24 (66%)
 Frame = +1

Query: 169 GNAFIVSAIPIWLFWRVHSLEIST 240
           G+ +I   + ++ +WR+++  +ST
Sbjct: 254 GSFYIPMLVMLFFYWRIYNAAVST 277


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 243 NYLVILVTAASTWLLALAYRNTKF 314
           NY+VIL+ +  TW  A    + K+
Sbjct: 4   NYIVILILSLLTWTYAEELYSDKY 27


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +1

Query: 178 FIVSAIPIWLFWRVHSLEIS 237
           F+ S  P W FW   S E S
Sbjct: 21  FVTSHRPAWWFWTATSHEAS 40


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 624 GSLMRHVIQTVLILNILDILW 686
           GS+  + I  +L+ NI+DI W
Sbjct: 73  GSVPVNNINLILLQNIIDICW 93


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 243 NYLVILVTAASTWLLALAYRNTKF 314
           NY+VIL+ +  TW  A    + K+
Sbjct: 4   NYIVILILSLLTWTYAEELYSDKY 27


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 1   VLPLNSTQLLFVFVKVKVTYLV 66
           VLPL +  LLF F+   V+ LV
Sbjct: 292 VLPLIAKYLLFTFIMNTVSILV 313


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,798
Number of Sequences: 438
Number of extensions: 5056
Number of successful extensions: 17
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)