Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00070
         (804 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17530.1 68417.m02622 Ras-related GTP-binding protein, putati...    30   1.6  
At1g06400.1 68414.m00677 Ras-related GTP-binding protein (ARA-2)...    28   6.3  
At1g01430.1 68414.m00058 expressed protein similar to hypothetic...    28   8.3  

>At4g17530.1 68417.m02622 Ras-related GTP-binding protein, putative
           very strong similarity to RAB1C [Lotus corniculatus var.
           japonicus] GI:1370166; contains Pfam profile PF00071:
           Ras family
          Length = 202

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = -2

Query: 266 RY*DNQIIAVLISNECTLQNNQIGIAETIKAFP*KRADDFVDTFRLKSCNNNSSSFV 96
           RY    +  +L+ N+C L + ++   ET KAF  +    F++T   K+  N   +F+
Sbjct: 108 RYASENVNKLLVGNKCDLTSQKVVSTETAKAFADELGIPFLET-SAKNATNVEEAFM 163


>At1g06400.1 68414.m00677 Ras-related GTP-binding protein (ARA-2)
           identical to Ras-related protein ARA-2 SP:P28185 from
           [Arabidopsis thaliana]
          Length = 216

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 19/66 (28%), Positives = 32/66 (48%)
 Frame = -2

Query: 257 DNQIIAVLISNECTLQNNQIGIAETIKAFP*KRADDFVDTFRLKSCNNNSSSFVKALLFF 78
           D  I+ +LI N+C L++      E  KAF  + +  F++T  L    N  ++F + L   
Sbjct: 116 DPNIVVMLIGNKCDLRHLVAVKTEEAKAFAERESLYFMETSAL-DATNVENAFTEVLTQI 174

Query: 77  PDIFTK 60
             I +K
Sbjct: 175 HKIVSK 180


>At1g01430.1 68414.m00058 expressed protein similar to hypothetical
           protein GB:CAB80917 GI:7267605 from [Arabidopsis
           thaliana]
          Length = 456

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 195 SNLVVLEGTFIGNKHRNYLVILVTAASTWLLALAYR 302
           S  + +EGT  G+ H+   + L + A   L+ LAYR
Sbjct: 8   SKSIKIEGTPFGSSHQRNQIFLKSVAFFLLIGLAYR 43


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,607,767
Number of Sequences: 28952
Number of extensions: 335582
Number of successful extensions: 801
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)