Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00069
         (498 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    21   5.4  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    21   5.4  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    21   5.4  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   5.4  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    21   5.4  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   5.4  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   5.4  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   5.4  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   7.1  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   9.4  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    21   9.4  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   9.4  

>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +1

Query: 151 DGEKLKKVITELNGKDVEQLIAAGREKLSSMP 246
           DG ++  V++   G D+   I  G   L  MP
Sbjct: 135 DGNQVDLVLSSETGGDLSDFITNGEWYLIGMP 166


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +1

Query: 151 DGEKLKKVITELNGKDVEQLIAAGREKLSSMP 246
           DG ++  V++   G D+   I  G   L  MP
Sbjct: 135 DGNQVDLVLSSETGGDLSDFITNGEWYLIGMP 166


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +1

Query: 151 DGEKLKKVITELNGKDVEQLIAAGREKLSSMP 246
           DG ++  V++   G D+   I  G   L  MP
Sbjct: 135 DGNQVDLVLSSETGGDLSDFITNGEWYLIGMP 166


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +1

Query: 151 DGEKLKKVITELNGKDVEQLIAAGREKLSSMP 246
           DG ++  V++   G D+   I  G   L  MP
Sbjct: 135 DGNQVDLVLSSETGGDLSDFITNGEWYLIGMP 166


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +1

Query: 151 DGEKLKKVITELNGKDVEQLIAAGREKLSSMP 246
           DG ++  V++   G D+   I  G   L  MP
Sbjct: 135 DGNQVDLVLSSETGGDLSDFITNGEWYLIGMP 166


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +1

Query: 151 DGEKLKKVITELNGKDVEQLIAAGREKLSSMP 246
           DG ++  V++   G D+   I  G   L  MP
Sbjct: 135 DGNQVDLVLSSETGGDLSDFITNGEWYLIGMP 166


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +1

Query: 151 DGEKLKKVITELNGKDVEQLIAAGREKLSSMP 246
           DG ++  V++   G D+   I  G   L  MP
Sbjct: 203 DGNQVDLVLSSETGGDLSDFITNGEWYLIGMP 234


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +1

Query: 151 DGEKLKKVITELNGKDVEQLIAAGREKLSSMP 246
           DG ++  V++   G D+   I  G   L  MP
Sbjct: 203 DGNQVDLVLSSETGGDLSDFITNGEWYLIGMP 234


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 140 PTELRIFSTSAAAGVVLPPS 81
           P E    STS ++G++ P S
Sbjct: 304 PAEAESLSTSGSSGILTPVS 323


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 10/42 (23%), Positives = 22/42 (52%)
 Frame = -2

Query: 212 ISCSTSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLP 87
           ++C++S+  S V++     P+A +  +    S  A   V++P
Sbjct: 156 VNCTSSIASSGVVSAGECGPAADVDEKTDANSWWALILVIVP 197


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 115 VEKILSSVGIEADGEKLKKVITELNGK 195
           V K +  +GI    +K+K ++ EL  K
Sbjct: 28  VGKGMKVIGIAPQVDKMKTLVEELKSK 54


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -2

Query: 233 SFSRPAAISCSTSLPLSSVITFLSFSPSASIPT 135
           SF+   A   + S+P +++IT L    +  +PT
Sbjct: 428 SFTATLASIGAASIPSAALITMLIVLTALGLPT 460


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,700
Number of Sequences: 438
Number of extensions: 1450
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)