Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00069
         (498 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g27710.3 68415.m03359 60S acidic ribosomal protein P2 (RPP2B)       84   6e-17
At2g27710.2 68415.m03358 60S acidic ribosomal protein P2 (RPP2B)       84   6e-17
At2g27710.1 68415.m03357 60S acidic ribosomal protein P2 (RPP2B)       84   6e-17
At3g44590.2 68416.m04793 60S acidic ribosomal protein P2 (RPP2D)...    81   5e-16
At3g44590.1 68416.m04792 60S acidic ribosomal protein P2 (RPP2D)...    81   5e-16
At2g27720.1 68415.m03360 60S acidic ribosomal protein P2 (RPP2A)       80   7e-16
At5g40040.1 68418.m04856 60S acidic ribosomal protein P2 (RPP2E)...    70   1e-12
At3g28500.1 68416.m03560 60S acidic ribosomal protein P2 (RPP2C)...    69   2e-12
At3g63200.1 68416.m07100 patatin-related low similarity to patat...    31   0.57 
At1g67140.1 68414.m07638 expressed protein                             29   2.3  
At1g69550.1 68414.m07998 disease resistance protein (TIR-NBS cla...    28   4.0  
At4g29880.1 68417.m04252 leucine-rich repeat family protein cont...    27   7.0  
At4g31210.1 68417.m04432 DNA topoisomerase family protein simila...    27   9.3  
At3g62850.1 68416.m07061 zinc finger protein-related contains Pf...    27   9.3  

>At2g27710.3 68415.m03359 60S acidic ribosomal protein P2 (RPP2B)
          Length = 115

 Score = 83.8 bits (198), Expect = 6e-17
 Identities = 38/69 (55%), Positives = 54/69 (78%)
 Frame = +1

Query: 49  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 228
           M+ VAAYLLAVL GK +P +AD++ IL SVG E +  +++ ++ E+ GKD+ +LIAAGRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 229 KLSSMPVGG 255
           KL+S+P GG
Sbjct: 61  KLASVPSGG 69


>At2g27710.2 68415.m03358 60S acidic ribosomal protein P2 (RPP2B)
          Length = 115

 Score = 83.8 bits (198), Expect = 6e-17
 Identities = 38/69 (55%), Positives = 54/69 (78%)
 Frame = +1

Query: 49  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 228
           M+ VAAYLLAVL GK +P +AD++ IL SVG E +  +++ ++ E+ GKD+ +LIAAGRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 229 KLSSMPVGG 255
           KL+S+P GG
Sbjct: 61  KLASVPSGG 69


>At2g27710.1 68415.m03357 60S acidic ribosomal protein P2 (RPP2B)
          Length = 115

 Score = 83.8 bits (198), Expect = 6e-17
 Identities = 38/69 (55%), Positives = 54/69 (78%)
 Frame = +1

Query: 49  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 228
           M+ VAAYLLAVL GK +P +AD++ IL SVG E +  +++ ++ E+ GKD+ +LIAAGRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 229 KLSSMPVGG 255
           KL+S+P GG
Sbjct: 61  KLASVPSGG 69


>At3g44590.2 68416.m04793 60S acidic ribosomal protein P2 (RPP2D)
           acidic ribosomal protein P2, maize,  PIR:S54179
          Length = 111

 Score = 80.6 bits (190), Expect = 5e-16
 Identities = 34/69 (49%), Positives = 54/69 (78%)
 Frame = +1

Query: 49  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 228
           M+  AA+LLAVLGG   P+A +++ I+ +VG + DGE ++ ++ E++GKD+ +LIA+GRE
Sbjct: 1   MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60

Query: 229 KLSSMPVGG 255
           KL+S+P GG
Sbjct: 61  KLASVPSGG 69


>At3g44590.1 68416.m04792 60S acidic ribosomal protein P2 (RPP2D)
           acidic ribosomal protein P2, maize,  PIR:S54179
          Length = 111

 Score = 80.6 bits (190), Expect = 5e-16
 Identities = 34/69 (49%), Positives = 54/69 (78%)
 Frame = +1

Query: 49  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 228
           M+  AA+LLAVLGG   P+A +++ I+ +VG + DGE ++ ++ E++GKD+ +LIA+GRE
Sbjct: 1   MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60

Query: 229 KLSSMPVGG 255
           KL+S+P GG
Sbjct: 61  KLASVPSGG 69


>At2g27720.1 68415.m03360 60S acidic ribosomal protein P2 (RPP2A)
          Length = 115

 Score = 80.2 bits (189), Expect = 7e-16
 Identities = 36/69 (52%), Positives = 52/69 (75%)
 Frame = +1

Query: 49  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 228
           M+ VAA+LLAVL GK +P   D++ IL SVG E +  +++ ++ E+ GKD+ +LIAAGRE
Sbjct: 1   MKVVAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 229 KLSSMPVGG 255
           KL+S+P GG
Sbjct: 61  KLASVPSGG 69


>At5g40040.1 68418.m04856 60S acidic ribosomal protein P2 (RPP2E)
           acidic ribosomal protein P2, Parthenium
           argentatum,SWISSPROT:RLA2_PARAR
          Length = 114

 Score = 69.7 bits (163), Expect = 1e-12
 Identities = 33/69 (47%), Positives = 47/69 (68%)
 Frame = +1

Query: 49  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 228
           M+ VAAYLLA L G   P+ AD++KI+ SVG E D EK+    + +  +DV +LIA GRE
Sbjct: 1   MKVVAAYLLAKLSGNENPSVADLKKIVESVGAEIDQEKIDLFFSLIKDRDVTELIAVGRE 60

Query: 229 KLSSMPVGG 255
           K++++  GG
Sbjct: 61  KMAALSSGG 69


>At3g28500.1 68416.m03560 60S acidic ribosomal protein P2 (RPP2C)
           similar to acidic ribosomal protein P2b (rpp2b)
           GB:U62753 GI:2431770 from [Zea mays]
          Length = 115

 Score = 68.9 bits (161), Expect = 2e-12
 Identities = 33/69 (47%), Positives = 47/69 (68%)
 Frame = +1

Query: 49  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 228
           M+ +AA+LLA LGG   P + D++KIL SVG E D  K+  + + +   DV +LIAAGRE
Sbjct: 1   MKVIAAFLLAKLGGNENPTSNDLKKILESVGAEIDETKIDLLFSLIKDHDVTELIAAGRE 60

Query: 229 KLSSMPVGG 255
           K+S++  GG
Sbjct: 61  KMSALSSGG 69


>At3g63200.1 68416.m07100 patatin-related low similarity to
           patatin-like latex protein allergen Hev b 7 - Hevea
           brasiliensis, EMBL:AF113546; contains patatin domain
           PF01734
          Length = 384

 Score = 30.7 bits (66), Expect = 0.57
 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
 Frame = +1

Query: 118 EKILSSVGIEADGEKLKKVITELNGKDVE----QLIAAGREKLSSMP 246
           E++L   G+E     +K+++TE NG+ +E    +L+A+G+  L   P
Sbjct: 325 EELLKERGVETAPFGVKRILTESNGERIEGFVQRLVASGKSSLPPSP 371


>At1g67140.1 68414.m07638 expressed protein
          Length = 2158

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = -1

Query: 234  QLLTSGRNKLFNILAVELSDYFLKLLTVSFDTDGAEDLLNVS 109
            Q L++GR      L+++L    L++L+ SF  D + D+L VS
Sbjct: 1403 QSLSAGRFFSSGFLSIDLCQELLQVLSYSFHMDSSWDILAVS 1444


>At1g69550.1 68414.m07998 disease resistance protein (TIR-NBS
           class), putative domain signature TIR-NBS exists,
           suggestive of a disease resistance protein.
          Length = 703

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -2

Query: 257 SPPTGIDDSFSRPAAISCSTSLPLSS 180
           SPP+ +  S S P+ +S STS P SS
Sbjct: 42  SPPSSLASSTSPPSTLSSSTSHPSSS 67


>At4g29880.1 68417.m04252 leucine-rich repeat family protein
           contains leucine rich repeats, Pfam:PF00560
          Length = 404

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 19/70 (27%), Positives = 33/70 (47%)
 Frame = -1

Query: 243 H*RQLLTSGRNKLFNILAVELSDYFLKLLTVSFDTDGAEDLLNVSGSWRGLATQHSQ*IR 64
           H +++  S   +L N++A+++    +K L  S        +LNVSG++     Q  Q  R
Sbjct: 87  HIKKIPESLTARLLNLIALDIHSNQIKALPNSIGCLSKLKILNVSGNFLVSLPQTIQNCR 146

Query: 63  GHVTHFLSPN 34
            H +    PN
Sbjct: 147 FHTSTKSGPN 156


>At4g31210.1 68417.m04432 DNA topoisomerase family protein similar to
            DNA Topoisomerase I (SP:Q9X3X7) {Zymomonas mobilis}
          Length = 1280

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = -1

Query: 183  LSDYFLKLLTVSFDTDGAEDLLNVSG---SWRGL 91
            L+ YF ++   SF  D   +L NVSG    W+GL
Sbjct: 1006 LTHYFTEITDYSFTADMETELDNVSGGVTEWKGL 1039


>At3g62850.1 68416.m07061 zinc finger protein-related contains Pfam
           profiles PF04396: Protein of unknown function DUF537,
           weak hit to PF00096: Zinc finger, C2H2 type
          Length = 472

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
 Frame = -2

Query: 260 CSPPTGIDDSFSRPAAISCSTSLPLSSVITFLSFSPSASIPTEL--RIFSTSAAAGVVLP 87
           C  P G D    RP+  +    L  S  I+   +      P ++   + ST  A   ++P
Sbjct: 25  CPIPEGYDARLVRPSIEAAFNELGYSGPISITGYGDQRETPCQILRGLSSTGVAVAQIIP 84

Query: 86  PSTAS 72
            S  S
Sbjct: 85  ESRCS 89


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,861,352
Number of Sequences: 28952
Number of extensions: 117991
Number of successful extensions: 351
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)