Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00068
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   7.2  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    26   7.2  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    26   7.2  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    25   9.5  

>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -1

Query: 176 LENVNQQSVLNTENLVVDDPIPSTSSGQVSSLTYYSVLDFSSYDSVRDPCY 24
           + ++N Q + N  NLV+   IP  S   V  + YY +  FS    + +  Y
Sbjct: 516 INDINYQILSNMNNLVLLATIP-VSLSSVFEVNYYYLPKFSDTPGLLEEAY 565


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -1

Query: 143 TENLVVDDPIPSTSSGQVSSLTYYSV 66
           TE L+  DPIPS+   ++ ++ Y+S+
Sbjct: 196 TEYLLSTDPIPSSCIHKIITVDYFSI 221


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -1

Query: 788  FRDTVHRRLNSRVGRLKHISQNFQFIFYYII 696
            F +  +RRL++++   + I+ NF FI  ++I
Sbjct: 1063 FNEINNRRLDNKLNIFERINHNFLFIAIFVI 1093


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 353 ALTHN*PTNCAQSTTLVN*NHLPKYCLRYN 442
           AL  N P+    S TLVN +  P+  L+YN
Sbjct: 720 ALNDNPPSQVNFSETLVNFSQPPRVLLKYN 749


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,026,736
Number of Sequences: 5004
Number of extensions: 57321
Number of successful extensions: 131
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)