Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00068
         (803 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g02205.2 68414.m00154 CER1 protein identical to maize gl1 hom...    28   6.3  
At1g02205.1 68414.m00153 CER1 protein identical to maize gl1 hom...    28   6.3  
At5g09920.1 68418.m01147 RNA polymerase II 15.9 kDa subunit (RPB...    28   8.3  

>At1g02205.2 68414.m00154 CER1 protein identical to maize gl1
           homolog (glossy1 locus) GI:1209703 and CER1 GI:1199467
           from [Arabidopsis thaliana]
          Length = 625

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = -3

Query: 339 LFKMNIQRGKKFVEMVLSTHLESNEGIFYISSXL-*FANY 223
           L++  ++RG   V++V  THL + E I+++   L  FA+Y
Sbjct: 280 LYEKTLERGDDIVDVVHLTHLTTPESIYHLRIGLASFASY 319


>At1g02205.1 68414.m00153 CER1 protein identical to maize gl1
           homolog (glossy1 locus) GI:1209703 and CER1 GI:1199467
           from [Arabidopsis thaliana]
          Length = 580

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = -3

Query: 339 LFKMNIQRGKKFVEMVLSTHLESNEGIFYISSXL-*FANY 223
           L++  ++RG   V++V  THL + E I+++   L  FA+Y
Sbjct: 280 LYEKTLERGDDIVDVVHLTHLTTPESIYHLRIGLASFASY 319


>At5g09920.1 68418.m01147 RNA polymerase II 15.9 kDa subunit
           (RPB15.9) identical to 15.9 kDa subunit of RNA
           polymerase II GI:2760362 from [Arabidopsis thaliana]
          Length = 138

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 629 RHEILEFDLCALVRLCVE 682
           RH++ EF+LC L  LC E
Sbjct: 83  RHQLTEFELCVLGNLCPE 100


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,870,847
Number of Sequences: 28952
Number of extensions: 268318
Number of successful extensions: 481
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)