Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00067
         (794 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   2.8  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           22   4.9  
AM712905-1|CAN84644.1|  102|Tribolium castaneum hypothetical pro...    22   4.9  
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    22   4.9  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    22   6.5  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/35 (22%), Positives = 20/35 (57%)
 Frame = -3

Query: 732  SWIVQFEGPQEITRVLELFSNSEDLMDESSTQIML 628
            SW+  F+G   ITR +  +  S+   + ++ ++++
Sbjct: 915  SWVAPFDGNSPITRYMIEYKQSKVSWEGNTERVLV 949


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 369 PWYQPSFTEVRKVLQLFRLRQINNG 443
           P  QP+    R   +  R++Q+NNG
Sbjct: 80  PQQQPASVARRNARERNRVKQVNNG 104



 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 636 SVLRTHP*DLHCWRKVQ 686
           SVL T+  DL C RK+Q
Sbjct: 58  SVLVTNNSDLRCKRKIQ 74


>AM712905-1|CAN84644.1|  102|Tribolium castaneum hypothetical
           protein protein.
          Length = 102

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 570 LSLANPRLYTNSRTLF 523
           LS A PRL  N+RT+F
Sbjct: 87  LSSAFPRLKRNARTIF 102


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 200 RRSSAIKKKREIFKRAEQSSRNTA 271
           R S   KK+RE+ + A+Q + N A
Sbjct: 298 RFSDESKKRRELLRLAQQVNANIA 321


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -1

Query: 533 GHSLSWGIPSNVRLGDT*HIHSSLIQTYKHT 441
           G+SLSW  P ++    +  + + + Q   HT
Sbjct: 174 GNSLSWNNPCSINSTSSQPVGTQIHQQTNHT 204


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,872
Number of Sequences: 336
Number of extensions: 4078
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21583952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)