Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00067
         (794 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|...    98   1e-21
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy...    97   2e-21
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom...    65   1e-11
SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces pom...    28   1.3  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   7.1  

>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score = 98.3 bits (234), Expect = 1e-21
 Identities = 68/176 (38%), Positives = 93/176 (52%), Gaps = 6/176 (3%)
 Frame = +1

Query: 262 EYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSP---KSVKFCNCLDCAK 432
           EYR  ER++I LAR+AR  GNY+VP E KL FV+RIRGIN + P   K ++    L    
Sbjct: 61  EYRAAEREQIELARKARAEGNYFVPHEPKLIFVVRIRGINNIPPKARKIMQLLRLLQINN 120

Query: 433 *TMVCLYV*IRLL*ICYVSPSLTLLGIPQLKECP*VSIQTWIRQAEWTTYTNHFQQHC*E 612
              V     I+ + +  V P +T  GIP  K    +  +    +            +   
Sbjct: 121 GIFVKFNKAIKEM-LQVVEPYVTY-GIPNHKTVRELIYKRGFGKVNKQRIP--LSDNAII 176

Query: 613 EAP*TQHYLC*--GLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWR-KKTIHYSTG 771
           EA   ++ +     LIHEI+TVG  FK A+NFLWPFKL++P GGWR +K  H+  G
Sbjct: 177 EAALGKYSILSVEDLIHEIYTVGPNFKQAANFLWPFKLSSPLGGWRERKFKHFIEG 232



 Score = 63.3 bits (147), Expect = 4e-11
 Identities = 27/47 (57%), Positives = 38/47 (80%)
 Frame = +2

Query: 509 GYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVED 649
           G PN K+VREL+YKRGF K++ QRIP++ N+I+E  L K++I+ VED
Sbjct: 144 GIPNHKTVRELIYKRGFGKVNKQRIPLSDNAIIEAALGKYSILSVED 190



 Score = 55.6 bits (128), Expect = 8e-09
 Identities = 22/42 (52%), Positives = 31/42 (73%)
 Frame = +3

Query: 393 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWDTP 518
           + RK++QL RL QINNG+FV+ NKA   ML++ EPY+ +  P
Sbjct: 105 KARKIMQLLRLLQINNGIFVKFNKAIKEMLQVVEPYVTYGIP 146


>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score = 97.5 bits (232), Expect = 2e-21
 Identities = 66/176 (37%), Positives = 92/176 (52%), Gaps = 6/176 (3%)
 Frame = +1

Query: 262 EYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSP---KSVKFCNCLDCAK 432
           EYR  ER++I L R+AR  GNYYVP E KL FVIRIRGIN + P   K ++    +    
Sbjct: 62  EYRKAEREQIELGRKARAEGNYYVPDETKLVFVIRIRGINNIPPKARKIMQLLRLIQINN 121

Query: 433 *TMVCLYV*IRLL*ICYVSPSLTLLGIPQLKECP*VSIQTWIRQAEWTTYTNHFQQHC*E 612
              V      + + +  V P +T  GIP LK    +  +    +            +   
Sbjct: 122 GVFVKFNKATKEM-LQVVEPYVTY-GIPNLKTVRELLYKRGFGKVNKQRIA--LSDNAII 177

Query: 613 EAP*TQHYLC*--GLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWR-KKTIHYSTG 771
           EA   ++ +     LIHEI+TVG  FK A+NF+WPF+L++P GGWR +K  H+  G
Sbjct: 178 EAALGKYSILSIEDLIHEIYTVGPNFKQAANFIWPFQLSSPLGGWRDRKFKHFIEG 233



 Score = 61.7 bits (143), Expect = 1e-10
 Identities = 26/47 (55%), Positives = 38/47 (80%)
 Frame = +2

Query: 509 GYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVED 649
           G PNLK+VREL+YKRGF K++ QRI ++ N+I+E  L K++I+ +ED
Sbjct: 145 GIPNLKTVRELLYKRGFGKVNKQRIALSDNAIIEAALGKYSILSIED 191



 Score = 58.0 bits (134), Expect = 1e-09
 Identities = 24/42 (57%), Positives = 32/42 (76%)
 Frame = +3

Query: 393 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWDTP 518
           + RK++QL RL QINNGVFV+ NKAT  ML++ EPY+ +  P
Sbjct: 106 KARKIMQLLRLIQINNGVFVKFNKATKEMLQVVEPYVTYGIP 147


>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 65.3 bits (152), Expect = 1e-11
 Identities = 26/47 (55%), Positives = 39/47 (82%)
 Frame = +2

Query: 509 GYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVED 649
           G PNL SVREL+YKRGF K++GQRI ++ N+++E+ L K+++I +ED
Sbjct: 143 GIPNLHSVRELIYKRGFGKINGQRIALSDNALIEEALGKYDVISIED 189



 Score = 58.8 bits (136), Expect = 8e-10
 Identities = 27/57 (47%), Positives = 36/57 (63%)
 Frame = +1

Query: 250 TVVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 420
           T +  YR +ER+ IRL R A+N+G+ +VP E KL FVIRI G+  + PK  K    L
Sbjct: 56  TFINNYRQRERERIRLNRSAKNKGDIFVPDETKLLFVIRIAGVKNMPPKIRKVLRLL 112



 Score = 56.0 bits (129), Expect = 6e-09
 Identities = 25/42 (59%), Positives = 31/42 (73%)
 Frame = +3

Query: 393 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWDTP 518
           ++RKVL+L RL +INN VFVR NKA   MLRI EPY+ +  P
Sbjct: 104 KIRKVLRLLRLSRINNAVFVRNNKAVAQMLRIVEPYVMYGIP 145



 Score = 39.1 bits (87), Expect = 7e-04
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +1

Query: 649 LIHEIFTVGEKFKYASNFLWPFKLNNPTGG-WRKKTIHYSTG 771
           +IHEI+ VG  FK  + FLWPF L         KK  H++ G
Sbjct: 190 IIHEIYNVGSHFKEVTKFLWPFTLTPVKHSLMEKKVKHFNEG 231


>SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 188

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -3

Query: 765 RIMNGLLAPTTSWIVQFEGPQEITRVLELFSNSE 664
           + MNGL  P   W +   GP  + R++  F   E
Sbjct: 73  KAMNGLPGPYVKWFLNSVGPDGLYRMVSAFDTKE 106


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = -3

Query: 702  EITRVLELFSNSEDLMDESSTQIMLCLWSLFSTMLLEVIGI 580
            E+ ++  LF NSED+M +  +  ++ L+ L S    E++ +
Sbjct: 1776 EMLKMCSLFGNSEDVMIKQLSIYVMSLFILRSQFPYELVNV 1816


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,216,565
Number of Sequences: 5004
Number of extensions: 67311
Number of successful extensions: 178
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)