Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00067
         (794 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814...    89   3e-18
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351...    88   9e-18
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213...    58   6e-09
02_05_0303 + 27717097-27717149,27717515-27717635,27717746-277180...    29   3.2  
04_04_0861 + 28836544-28836609,28838191-28838264,28838551-288386...    28   9.8  

>08_01_0835 +
           8147177-8147359,8147871-8147968,8148045-8148102,
           8148192-8148271,8148770-8148872,8148966-8149181
          Length = 245

 Score = 89.4 bits (212), Expect = 3e-18
 Identities = 62/173 (35%), Positives = 85/173 (49%), Gaps = 2/173 (1%)
 Frame = +1

Query: 259 KEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCLDCAK*- 435
           +EY  +E++ ++L R+AR +G +YV  EAKL FV+RIRGIN + PK+ K    L   +  
Sbjct: 56  QEYDAQEKELVQLKREARMKGGFYVSPEAKLLFVVRIRGINAMHPKTRKILQLLRLRQIF 115

Query: 436 TMVCLYV*IRLL*ICYVSPSLTLLGIPQLKECP*VSIQTWIRQAEWTTYTNHFQQHC*EE 615
             V L V    + +          G P LK    +  +    +           +   EE
Sbjct: 116 NGVFLKVNKATINMLRRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQRIPLQNNKVI-EE 174

Query: 616 AP*TQHYLC*-GLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYSTG 771
                  +C   L+HEI TVG  FK A+NFLWPFKL  P GG +KK  HY  G
Sbjct: 175 GLGKHDIICIEDLVHEIMTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEG 227



 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 31/47 (65%), Positives = 41/47 (87%)
 Frame = +2

Query: 509 GYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVED 649
           GYPNLKSVREL+YKRG+ KL+ QRIP+ +N ++E+ L KH+IIC+ED
Sbjct: 140 GYPNLKSVRELIYKRGYGKLNKQRIPLQNNKVIEEGLGKHDIICIED 186



 Score = 62.5 bits (145), Expect = 4e-10
 Identities = 27/42 (64%), Positives = 35/42 (83%)
 Frame = +3

Query: 393 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWDTP 518
           + RK+LQL RLRQI NGVF+++NKAT+NMLR  EPY+A+  P
Sbjct: 101 KTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYP 142



 Score = 28.3 bits (60), Expect = 7.4
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +2

Query: 113 KLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQ 253
           K   VPESVLK             +  L  +  A++ ++ IF RA+Q
Sbjct: 7   KAAVVPESVLKKRKREEQWAADRKEKALAEKKKAVESRKLIFARAKQ 53


>04_04_1075 +
           30634141-30634320,30634917-30635014,30635113-30635170,
           30635259-30635338,30635686-30635788,30635847-30636080
          Length = 250

 Score = 87.8 bits (208), Expect = 9e-18
 Identities = 62/178 (34%), Positives = 88/178 (49%), Gaps = 7/178 (3%)
 Frame = +1

Query: 259 KEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCLDCAK*- 435
           +EY  +E++ ++L R+AR +G +YV  E KL FV+RIRGIN + PK+ K    L   +  
Sbjct: 55  EEYEAQEKELVQLKREARMKGGFYVSPEEKLLFVVRIRGINAMHPKTRKILQLLRLRQIF 114

Query: 436 TMVCLYV*IRLL*ICYVSPSLTLLGIPQLKECP*VSIQTWIRQA--EWTTYTNHF---QQ 600
             V L V    + +          G P LK    +  +    +   +    TN+    + 
Sbjct: 115 NGVFLKVNKATINMLRRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQRIPLTNNKVIEES 174

Query: 601 HC*EEAP*TQHYLC*-GLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYSTG 771
            C  +       +C   L+HEI TVG  FK A+NFLWPFKL  P GG +KK  HY  G
Sbjct: 175 WCLYQGLGKHDIICIEDLVHEIMTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEG 232



 Score = 70.9 bits (166), Expect = 1e-12
 Identities = 32/53 (60%), Positives = 42/53 (79%), Gaps = 6/53 (11%)
 Frame = +2

Query: 509 GYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKR------LHKHNIICVED 649
           GYPNLKSVREL+YKRG+ KL+ QRIP+T+N ++E+       L KH+IIC+ED
Sbjct: 139 GYPNLKSVRELIYKRGYGKLNKQRIPLTNNKVIEESWCLYQGLGKHDIICIED 191



 Score = 62.5 bits (145), Expect = 4e-10
 Identities = 27/42 (64%), Positives = 35/42 (83%)
 Frame = +3

Query: 393 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWDTP 518
           + RK+LQL RLRQI NGVF+++NKAT+NMLR  EPY+A+  P
Sbjct: 100 KTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYP 141


>08_02_1442 +
           27120604-27120890,27121029-27121166,27121280-27121382,
           27121877-27122036,27122927-27123114,27123203-27124770,
           27124882-27125869,27126595-27127098,27127347-27127433,
           27127753-27127821,27128012-27128041
          Length = 1373

 Score = 58.4 bits (135), Expect = 6e-09
 Identities = 23/47 (48%), Positives = 36/47 (76%)
 Frame = +2

Query: 509 GYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVED 649
           G+PNLK+V++L+YK+G   L  +  P+TSN ++EK L ++ IIC+ED
Sbjct: 142 GFPNLKNVKDLIYKKGRGFLDKEPFPLTSNDLIEKALGEYGIICLED 188



 Score = 38.7 bits (86), Expect = 0.005
 Identities = 17/27 (62%), Positives = 20/27 (74%)
 Frame = +1

Query: 649 LIHEIFTVGEKFKYASNFLWPFKLNNP 729
           L+HEI +VG  F+ ASNFL PFKL  P
Sbjct: 189 LVHEIASVGPHFREASNFLMPFKLKCP 215



 Score = 37.5 bits (83), Expect = 0.012
 Identities = 15/41 (36%), Positives = 26/41 (63%)
 Frame = +3

Query: 396 VRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWDTP 518
           +R++L+  RL Q+  GVF++   AT+  L + EP+I +  P
Sbjct: 104 MRRILRKLRLTQVLTGVFLKATDATMKRLLVVEPFITYGFP 144


>02_05_0303 +
           27717097-27717149,27717515-27717635,27717746-27718057,
           27718172-27718276,27718367-27718821,27718964-27719094,
           27719215-27719268,27719378-27719747,27719848-27719981,
           27720081-27720319
          Length = 657

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -3

Query: 726 IVQFEGPQEITRVLELFSNSEDLMDESSTQIMLCLWSLFSTMLLEV 589
           ++QF G   +    ++ S SEDL+D+ S   M  L +L +T L  V
Sbjct: 217 LLQFIGQHALIIPEDMHSGSEDLVDDQSYHFMSLLLNLANTFLYMV 262


>04_04_0861 +
           28836544-28836609,28838191-28838264,28838551-28838671,
           28838832-28839143,28839241-28839345,28839447-28839901,
           28840116-28840417,28840589-28840767,28841256-28841446,
           28841595-28841728,28841875-28842113
          Length = 725

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = -3

Query: 747 LAPTTSWIVQFEGPQEITRVLELFSNSEDLMDESSTQIMLCLWSLFSTMLLEV 589
           L   TS++ QF G   +    ++ S SEDL+D+ S   M  + +L +T L  V
Sbjct: 240 LTHATSFL-QFLGQHALIIQEDVQSGSEDLVDDQSYHFMSLILNLVNTFLYMV 291


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,918,459
Number of Sequences: 37544
Number of extensions: 427956
Number of successful extensions: 995
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)