Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00067
(794 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32) 99 5e-21
SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_51354| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_38184| Best HMM Match : HisKA_2 (HMM E-Value=8.6) 29 3.3
SB_39528| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.7
SB_25312| Best HMM Match : Vicilin_N (HMM E-Value=0.61) 29 5.7
SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.7
SB_2192| Best HMM Match : rve (HMM E-Value=4e-23) 29 5.7
SB_47959| Best HMM Match : rve (HMM E-Value=3e-29) 28 7.6
SB_34135| Best HMM Match : rve (HMM E-Value=3e-29) 28 7.6
SB_29251| Best HMM Match : rve (HMM E-Value=2.3e-29) 28 7.6
SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37) 28 7.6
SB_54416| Best HMM Match : rve (HMM E-Value=1.4e-27) 28 7.6
SB_3768| Best HMM Match : Involucrin (HMM E-Value=0.021) 28 7.6
>SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)
Length = 245
Score = 98.7 bits (235), Expect = 5e-21
Identities = 68/176 (38%), Positives = 91/176 (51%), Gaps = 4/176 (2%)
Frame = +1
Query: 256 VKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIR---IRGINQVSPKSVKFCNCLDC 426
VKEYR KE DE+R+ + A+ GN+YVP EA+LAFVIR I G++ K ++
Sbjct: 55 VKEYRQKEVDELRMKKMAKKHGNFYVPPEARLAFVIRIRGINGVSPKVRKILQLLRLRQI 114
Query: 427 AK*TMVCLYV*IRLL*ICYVSPSLTLLGIPQLKECP*VSIQTWIRQAEWTTYTNHFQQHC 606
V L + + V P + G P LK + + + +
Sbjct: 115 NNGVFVRLNKATANM-LRIVQPYIAF-GYPNLKSVRELIYKRGYGKVDKQRVALT-DNSI 171
Query: 607 *EEAP*TQHYLC*-GLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYSTG 771
E+ +C LIHEIFTVGE FK ASNFLWPFKL++P GG+RKKT H+ G
Sbjct: 172 VEKVLGKHGIICVEDLIHEIFTVGEHFKEASNFLWPFKLSSPKGGFRKKTTHFVEG 227
Score = 77.0 bits (181), Expect = 2e-14
Identities = 34/47 (72%), Positives = 39/47 (82%)
Frame = +2
Query: 509 GYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVED 649
GYPNLKSVREL+YKRG+ K+ QR+ +T NSIVEK L KH IICVED
Sbjct: 140 GYPNLKSVRELIYKRGYGKVDKQRVALTDNSIVEKVLGKHGIICVED 186
Score = 71.7 bits (168), Expect = 6e-13
Identities = 33/42 (78%), Positives = 37/42 (88%)
Frame = +3
Query: 393 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWDTP 518
+VRK+LQL RLRQINNGVFVRLNKAT NMLRI +PYIA+ P
Sbjct: 101 KVRKILQLLRLRQINNGVFVRLNKATANMLRIVQPYIAFGYP 142
Score = 33.9 bits (74), Expect = 0.15
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = +2
Query: 101 EDSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQSSRNTASRN 280
+D K+P VPE++LK + L ++ K++EIFKRAE+ + +
Sbjct: 3 QDRVKVPRVPETLLKKRKSLEQIKAARAKAQLAQKKLQHGKRKEIFKRAEKYVKEYRQKE 62
Query: 281 V 283
V
Sbjct: 63 V 63
>SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1211
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +2
Query: 299 PDKHAIVATTTFPGKPNWHLSSESVVSTKFHRSP*SSATV*TAPNK 436
PDK A+ TTT P + ++ T + R P S T+ T P K
Sbjct: 363 PDKTAVPKTTTAPETTDASKTTVETQQTTYSRDPEISVTISTQPKK 408
>SB_51354| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 554
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/44 (36%), Positives = 27/44 (61%)
Frame = -3
Query: 609 STMLLEVIGIRCPLSLANPRLYTNSRTLFKLGYPKQCKARRYVA 478
+T+++ + +R SLANP LYT +T F+L K+ + R +A
Sbjct: 279 TTVIILTLFLRFLSSLANPLLYTFFKTDFQLALKKRNERIRRIA 322
>SB_38184| Best HMM Match : HisKA_2 (HMM E-Value=8.6)
Length = 528
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +1
Query: 637 LC*GLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKT 753
LC G + E+ TV E F+ NFL FK+ P KKT
Sbjct: 347 LC-GDLSEMITVEEAFQMCENFLEKFKIFFPLDAPNKKT 384
>SB_39528| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1029
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = +2
Query: 437 QWCVCTSE*GYCEYATYRRALHCLGYP---NLKSVRELV 544
+WC T E Y TY RA+ C Y K+ RE++
Sbjct: 841 EWCKATMEASYTMNITYHRAIKCSPYEAVFGFKAHREVI 879
>SB_25312| Best HMM Match : Vicilin_N (HMM E-Value=0.61)
Length = 219
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = +2
Query: 437 QWCVCTSE*GYCEYATYRRALHCLGYP---NLKSVRELV 544
+WC T E Y TY RA+ C Y K+ RE++
Sbjct: 64 EWCKATMEASYTMNITYHRAIKCSPYEAVFGFKAHREVI 102
>SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3297
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = +2
Query: 437 QWCVCTSE*GYCEYATYRRALHCLGYP---NLKSVRELV 544
+WC T E Y TY RA+ C Y K+ RE++
Sbjct: 1011 EWCKATMEASYTMNITYHRAIKCSPYQAVFGFKAHREVI 1049
>SB_2192| Best HMM Match : rve (HMM E-Value=4e-23)
Length = 491
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = +2
Query: 437 QWCVCTSE*GYCEYATYRRALHCLGYP---NLKSVRELV 544
+WC T E Y TY RA+ C Y K+ RE++
Sbjct: 281 EWCKATMEASYTMNITYHRAIKCSPYQAVFGFKAHREVI 319
>SB_47959| Best HMM Match : rve (HMM E-Value=3e-29)
Length = 622
Score = 28.3 bits (60), Expect = 7.6
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +2
Query: 437 QWCVCTSE*GYCEYATYRRALHCLGY 514
+WC T E Y TY RA+ C Y
Sbjct: 370 EWCKATMEASYTMNITYHRAIKCSPY 395
>SB_34135| Best HMM Match : rve (HMM E-Value=3e-29)
Length = 324
Score = 28.3 bits (60), Expect = 7.6
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +2
Query: 437 QWCVCTSE*GYCEYATYRRALHCLGY 514
+WC T E Y TY RA+ C Y
Sbjct: 289 EWCKATMEASYTMNITYHRAIKCSPY 314
>SB_29251| Best HMM Match : rve (HMM E-Value=2.3e-29)
Length = 324
Score = 28.3 bits (60), Expect = 7.6
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +2
Query: 437 QWCVCTSE*GYCEYATYRRALHCLGY 514
+WC T E Y TY RA+ C Y
Sbjct: 289 EWCKATMEASYTMNITYHRAIKCSPY 314
>SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)
Length = 712
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Frame = +1
Query: 250 TVVKEYRI--KERDEIRLARQARNRGNYYVP 336
++ ++YR K RD +AR+ R+RG YY+P
Sbjct: 473 SISEKYRSSGKIRDTSSIARETRSRGPYYLP 503
>SB_54416| Best HMM Match : rve (HMM E-Value=1.4e-27)
Length = 1068
Score = 28.3 bits (60), Expect = 7.6
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +2
Query: 437 QWCVCTSE*GYCEYATYRRALHCLGY 514
+WC T E Y TY RA+ C Y
Sbjct: 470 EWCKATMEASYTMNITYHRAIKCSPY 495
>SB_3768| Best HMM Match : Involucrin (HMM E-Value=0.021)
Length = 205
Score = 28.3 bits (60), Expect = 7.6
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +2
Query: 437 QWCVCTSE*GYCEYATYRRALHCLGY 514
+WC T E Y TY RA+ C Y
Sbjct: 64 EWCKATMEASYTMNITYHRAIKCSPY 89
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,263,255
Number of Sequences: 59808
Number of extensions: 505839
Number of successful extensions: 1178
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1178
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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